Strain Fitness in Xanthobacter sp. DMC5 around GFF2488

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2487 and GFF2488 are separated by 100 nucleotidesGFF2488 and GFF2489 are separated by 3 nucleotidesGFF2489 and GFF2490 are separated by 10 nucleotides GFF2487 - Succinate dehydrogenase iron-sulfur subunit, at 148,537 to 149,322 GFF2487 GFF2488 - Succinate dehydrogenase flavoprotein subunit, at 149,423 to 151,258 GFF2488 GFF2489 - hypothetical protein, at 151,262 to 151,678 GFF2489 GFF2490 - Succinate dehydrogenase cytochrome b556 subunit, at 151,689 to 152,087 GFF2490 Position (kb) 149 150 151 152Strain fitness (log2 ratio) -1 0 1at 148.424 kb on + strandat 148.424 kb on + strandat 148.425 kb on - strandat 148.514 kb on - strandat 152.172 kb on - strandat 152.182 kb on - strandat 152.182 kb on - strandat 152.212 kb on + strandat 152.213 kb on - strandat 152.226 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
148,424 + -0.1
148,424 + -0.8
148,425 - -0.1
148,514 - +0.2
152,172 - -0.7
152,182 - -1.2
152,182 - -1.1
152,212 + -1.2
152,213 - -0.9
152,226 + -1.3

Or see this region's nucleotide sequence