Strain Fitness in Xanthobacter sp. DMC5 around GFF2468

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2467 and GFF2468 are separated by 2 nucleotidesGFF2468 and GFF2469 are separated by 10 nucleotides GFF2467 - hypothetical protein, at 125,461 to 126,174 GFF2467 GFF2468 - hypothetical protein, at 126,177 to 126,626 GFF2468 GFF2469 - hypothetical protein, at 126,637 to 127,782 GFF2469 Position (kb) 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 125.250 kb on - strandat 125.250 kb on - strandat 125.686 kb on + strand, within GFF2467at 125.687 kb on - strand, within GFF2467at 125.879 kb on - strand, within GFF2467at 126.005 kb on + strand, within GFF2467at 126.006 kb on - strand, within GFF2467at 126.683 kb on - strandat 126.770 kb on + strand, within GFF2469at 126.770 kb on + strand, within GFF2469at 126.771 kb on - strand, within GFF2469at 126.771 kb on - strand, within GFF2469at 126.771 kb on - strand, within GFF2469at 126.812 kb on + strand, within GFF2469at 126.935 kb on + strand, within GFF2469at 126.935 kb on + strand, within GFF2469at 126.935 kb on + strand, within GFF2469at 126.935 kb on + strand, within GFF2469at 126.936 kb on - strand, within GFF2469at 127.304 kb on + strand, within GFF2469at 127.305 kb on - strand, within GFF2469at 127.314 kb on + strand, within GFF2469at 127.346 kb on + strand, within GFF2469at 127.346 kb on + strand, within GFF2469at 127.346 kb on + strand, within GFF2469at 127.346 kb on + strand, within GFF2469at 127.346 kb on + strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.442 kb on + strand, within GFF2469at 127.442 kb on + strand, within GFF2469at 127.469 kb on + strand, within GFF2469at 127.469 kb on + strand, within GFF2469at 127.470 kb on - strand, within GFF2469at 127.470 kb on - strand, within GFF2469at 127.470 kb on - strand, within GFF2469at 127.496 kb on + strand, within GFF2469

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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125,250 - +1.2
125,250 - -1.4
125,686 + GFF2467 0.32 +0.2
125,687 - GFF2467 0.32 -0.1
125,879 - GFF2467 0.59 -0.8
126,005 + GFF2467 0.76 +0.2
126,006 - GFF2467 0.76 -0.3
126,683 - +1.0
126,770 + GFF2469 0.12 +0.4
126,770 + GFF2469 0.12 -0.5
126,771 - GFF2469 0.12 -1.7
126,771 - GFF2469 0.12 -0.3
126,771 - GFF2469 0.12 +0.2
126,812 + GFF2469 0.15 +0.9
126,935 + GFF2469 0.26 +0.2
126,935 + GFF2469 0.26 +2.0
126,935 + GFF2469 0.26 -2.4
126,935 + GFF2469 0.26 +0.2
126,936 - GFF2469 0.26 -0.3
127,304 + GFF2469 0.58 -0.1
127,305 - GFF2469 0.58 -0.0
127,314 + GFF2469 0.59 +0.0
127,346 + GFF2469 0.62 +0.3
127,346 + GFF2469 0.62 +1.1
127,346 + GFF2469 0.62 -0.4
127,346 + GFF2469 0.62 -0.5
127,346 + GFF2469 0.62 +0.3
127,347 - GFF2469 0.62 +0.3
127,347 - GFF2469 0.62 +1.2
127,347 - GFF2469 0.62 -1.8
127,347 - GFF2469 0.62 -0.9
127,347 - GFF2469 0.62 -0.6
127,347 - GFF2469 0.62 -0.8
127,347 - GFF2469 0.62 -0.3
127,347 - GFF2469 0.62 -0.5
127,442 + GFF2469 0.70 -0.2
127,442 + GFF2469 0.70 +0.3
127,469 + GFF2469 0.73 -0.8
127,469 + GFF2469 0.73 +0.7
127,470 - GFF2469 0.73 -0.4
127,470 - GFF2469 0.73 -0.1
127,470 - GFF2469 0.73 +0.5
127,496 + GFF2469 0.75 -0.8

Or see this region's nucleotide sequence