Strain Fitness in Xanthobacter sp. DMC5 around GFF2455

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2454 and GFF2455 are separated by 12 nucleotidesGFF2455 and GFF2456 are separated by 180 nucleotidesGFF2456 and GFF2457 are separated by 28 nucleotides GFF2454 - Phenylalanine--tRNA ligase beta subunit, at 111,653 to 114,067 GFF2454 GFF2455 - Phenylalanine--tRNA ligase alpha subunit, at 114,080 to 115,192 GFF2455 GFF2456 - 50S ribosomal protein L20, at 115,373 to 115,735 GFF2456 GFF2457 - 50S ribosomal protein L35, at 115,764 to 115,964 GFF2457 Position (kb) 114 115 116Strain fitness (log2 ratio) -1 0 1at 114.082 kb on - strandat 115.200 kb on - strandat 115.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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114,082 - -0.3
115,200 - -0.8
115,254 - +0.7

Or see this region's nucleotide sequence