Strain Fitness in Xanthobacter sp. DMC5 around GFF2452

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2451 and GFF2452 overlap by 8 nucleotidesGFF2452 and GFF2453 are separated by 44 nucleotidesGFF2453 and GFF2454 are separated by 234 nucleotides GFF2451 - Membrane protein insertase YidC, at 108,845 to 110,692 GFF2451 GFF2452 - Ribonuclease P protein component, at 110,685 to 111,239 GFF2452 GFF2453 - 50S ribosomal protein L34, at 111,284 to 111,418 GFF2453 GFF2454 - Phenylalanine--tRNA ligase beta subunit, at 111,653 to 114,067 GFF2454 Position (kb) 110 111 112Strain fitness (log2 ratio) -1 0 1at 110.794 kb on - strand, within GFF2452at 111.587 kb on - strandat 111.587 kb on - strandat 111.651 kb on + strandat 111.651 kb on + strandat 111.651 kb on + strandat 111.651 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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110,794 - GFF2452 0.20 +0.7
111,587 - -0.3
111,587 - -0.8
111,651 + -0.4
111,651 + +1.0
111,651 + +1.0
111,651 + -0.3

Or see this region's nucleotide sequence