Strain Fitness in Xanthobacter sp. DMC5 around GFF2433

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2431 and GFF2432 are separated by 111 nucleotidesGFF2432 and GFF2433 are separated by 54 nucleotidesGFF2433 and GFF2434 are separated by 5 nucleotides GFF2431 - Thiamine-phosphate synthase, at 89,210 to 89,734 GFF2431 GFF2432 - Thiazole synthase, at 89,846 to 90,637 GFF2432 GFF2433 - hypothetical protein, at 90,692 to 90,898 GFF2433 GFF2434 - Glycine oxidase, at 90,904 to 92,109 GFF2434 Position (kb) 90 91Strain fitness (log2 ratio) -1 0 1at 90.672 kb on + strandat 90.672 kb on + strandat 90.672 kb on + strandat 90.672 kb on + strandat 90.673 kb on - strandat 90.673 kb on - strandat 90.675 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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90,672 + -0.2
90,672 + +0.7
90,672 + -1.0
90,672 + -1.1
90,673 - -1.5
90,673 - -0.3
90,675 + +1.2

Or see this region's nucleotide sequence