Strain Fitness in Xanthobacter sp. DMC5 around GFF2418

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2416 and GFF2417 are separated by 7 nucleotidesGFF2417 and GFF2418 are separated by 135 nucleotidesGFF2418 and GFF2419 are separated by 16 nucleotides GFF2416 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase, at 72,200 to 72,928 GFF2416 GFF2417 - Imidazole glycerol phosphate synthase subunit HisF, at 72,936 to 73,709 GFF2417 GFF2418 - Phosphoribosyl-ATP pyrophosphatase, at 73,845 to 74,171 GFF2418 GFF2419 - Pantothenate kinase, at 74,188 to 75,159 GFF2419 Position (kb) 73 74 75Strain fitness (log2 ratio) -1 0 1at 72.926 kb on + strandat 72.926 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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72,926 + +0.5
72,926 + -0.2

Or see this region's nucleotide sequence