Strain Fitness in Xanthobacter sp. DMC5 around GFF2415

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2413 and GFF2414 are separated by 34 nucleotidesGFF2414 and GFF2415 are separated by 3 nucleotidesGFF2415 and GFF2416 overlap by 4 nucleotidesGFF2416 and GFF2417 are separated by 7 nucleotides GFF2413 - Imidazoleglycerol-phosphate dehydratase, at 70,430 to 71,023 GFF2413 GFF2414 - hypothetical protein, at 71,058 to 71,543 GFF2414 GFF2415 - Imidazole glycerol phosphate synthase subunit HisH, at 71,547 to 72,203 GFF2415 GFF2416 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase, at 72,200 to 72,928 GFF2416 GFF2417 - Imidazole glycerol phosphate synthase subunit HisF, at 72,936 to 73,709 GFF2417 Position (kb) 71 72 73Strain fitness (log2 ratio) -1 0 1at 71.217 kb on + strand, within GFF2414at 71.217 kb on + strand, within GFF2414at 71.217 kb on + strand, within GFF2414at 71.217 kb on + strand, within GFF2414at 71.364 kb on + strand, within GFF2414at 72.926 kb on + strandat 72.926 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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71,217 + GFF2414 0.33 +0.0
71,217 + GFF2414 0.33 +0.9
71,217 + GFF2414 0.33 +0.3
71,217 + GFF2414 0.33 -0.3
71,364 + GFF2414 0.63 +0.5
72,926 + +0.5
72,926 + -0.2

Or see this region's nucleotide sequence