Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2402 and GFF2403 are separated by 210 nucleotides GFF2403 and GFF2404 are separated by 10 nucleotides
GFF2402 - hypothetical protein, at 55,919 to 56,893
GFF2402
GFF2403 - hypothetical protein, at 57,104 to 57,565
GFF2403
GFF2404 - hypothetical protein, at 57,576 to 59,075
GFF2404
Position (kb) 57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.174 kb on + strand, within GFF2402 at 56.174 kb on + strand, within GFF2402 at 56.174 kb on + strand, within GFF2402 at 56.222 kb on + strand, within GFF2402 at 56.237 kb on + strand, within GFF2402 at 56.371 kb on + strand, within GFF2402 at 56.371 kb on + strand, within GFF2402 at 56.372 kb on - strand, within GFF2402 at 56.375 kb on + strand, within GFF2402 at 56.375 kb on + strand, within GFF2402 at 56.376 kb on - strand, within GFF2402 at 56.463 kb on - strand, within GFF2402 at 56.573 kb on + strand, within GFF2402 at 56.573 kb on + strand, within GFF2402 at 56.574 kb on - strand, within GFF2402 at 56.675 kb on + strand, within GFF2402 at 56.675 kb on + strand, within GFF2402 at 56.675 kb on + strand, within GFF2402 at 56.675 kb on + strand, within GFF2402 at 56.675 kb on + strand, within GFF2402 at 56.676 kb on - strand, within GFF2402 at 56.676 kb on - strand, within GFF2402 at 56.676 kb on - strand, within GFF2402 at 56.676 kb on - strand, within GFF2402 at 56.676 kb on - strand, within GFF2402 at 56.676 kb on - strand, within GFF2402 at 56.883 kb on - strand at 56.952 kb on + strand at 56.955 kb on - strand at 57.006 kb on - strand at 57.080 kb on + strand at 57.196 kb on + strand, within GFF2403 at 57.485 kb on + strand, within GFF2403 at 57.633 kb on - strand at 57.633 kb on - strand at 57.639 kb on + strand at 57.640 kb on - strand at 57.640 kb on - strand at 57.777 kb on + strand, within GFF2404 at 57.777 kb on + strand, within GFF2404 at 57.778 kb on - strand, within GFF2404 at 57.778 kb on - strand, within GFF2404 at 57.778 kb on - strand, within GFF2404 at 57.778 kb on - strand, within GFF2404 at 57.778 kb on - strand, within GFF2404 at 57.793 kb on - strand, within GFF2404 at 58.014 kb on + strand, within GFF2404 at 58.014 kb on + strand, within GFF2404 at 58.134 kb on + strand, within GFF2404 at 58.134 kb on + strand, within GFF2404 at 58.134 kb on + strand, within GFF2404 at 58.134 kb on + strand, within GFF2404 at 58.134 kb on + strand, within GFF2404 at 58.134 kb on + strand, within GFF2404 at 58.134 kb on + strand, within GFF2404 at 58.135 kb on - strand, within GFF2404 at 58.135 kb on - strand, within GFF2404 at 58.410 kb on + strand, within GFF2404
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 56,174 + GFF2402 0.26 +0.3 56,174 + GFF2402 0.26 -1.0 56,174 + GFF2402 0.26 +1.8 56,222 + GFF2402 0.31 +0.7 56,237 + GFF2402 0.33 -0.2 56,371 + GFF2402 0.46 +0.0 56,371 + GFF2402 0.46 -0.4 56,372 - GFF2402 0.46 -1.9 56,375 + GFF2402 0.47 +1.5 56,375 + GFF2402 0.47 +0.1 56,376 - GFF2402 0.47 -1.6 56,463 - GFF2402 0.56 +1.1 56,573 + GFF2402 0.67 +0.1 56,573 + GFF2402 0.67 +1.5 56,574 - GFF2402 0.67 -0.1 56,675 + GFF2402 0.78 -0.1 56,675 + GFF2402 0.78 -0.0 56,675 + GFF2402 0.78 +1.2 56,675 + GFF2402 0.78 -1.0 56,675 + GFF2402 0.78 +2.3 56,676 - GFF2402 0.78 +0.8 56,676 - GFF2402 0.78 +0.7 56,676 - GFF2402 0.78 -1.8 56,676 - GFF2402 0.78 +0.1 56,676 - GFF2402 0.78 +1.3 56,676 - GFF2402 0.78 +0.2 56,883 - +1.5 56,952 + +0.7 56,955 - +0.8 57,006 - +0.7 57,080 + +0.2 57,196 + GFF2403 0.20 -0.4 57,485 + GFF2403 0.82 +0.2 57,633 - -0.5 57,633 - +0.1 57,639 + +0.5 57,640 - +1.1 57,640 - +0.0 57,777 + GFF2404 0.13 +0.0 57,777 + GFF2404 0.13 +1.4 57,778 - GFF2404 0.13 -0.3 57,778 - GFF2404 0.13 +0.3 57,778 - GFF2404 0.13 +0.6 57,778 - GFF2404 0.13 +1.3 57,778 - GFF2404 0.13 -0.5 57,793 - GFF2404 0.14 +0.0 58,014 + GFF2404 0.29 -0.8 58,014 + GFF2404 0.29 +0.4 58,134 + GFF2404 0.37 +1.1 58,134 + GFF2404 0.37 +0.4 58,134 + GFF2404 0.37 -0.1 58,134 + GFF2404 0.37 -1.4 58,134 + GFF2404 0.37 +0.6 58,134 + GFF2404 0.37 +0.1 58,134 + GFF2404 0.37 +1.8 58,135 - GFF2404 0.37 +0.6 58,135 - GFF2404 0.37 -0.3 58,410 + GFF2404 0.56 -0.1
Or see this region's nucleotide sequence