Strain Fitness in Xanthobacter sp. DMC5 around GFF2402

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2401 and GFF2402 are separated by 266 nucleotidesGFF2402 and GFF2403 are separated by 210 nucleotidesGFF2403 and GFF2404 are separated by 10 nucleotides GFF2401 - hypothetical protein, at 53,610 to 55,652 GFF2401 GFF2402 - hypothetical protein, at 55,919 to 56,893 GFF2402 GFF2403 - hypothetical protein, at 57,104 to 57,565 GFF2403 GFF2404 - hypothetical protein, at 57,576 to 59,075 GFF2404 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 54.949 kb on + strand, within GFF2401at 54.949 kb on + strand, within GFF2401at 54.950 kb on - strand, within GFF2401at 54.950 kb on - strand, within GFF2401at 55.154 kb on - strand, within GFF2401at 55.154 kb on - strand, within GFF2401at 55.154 kb on - strand, within GFF2401at 55.159 kb on + strand, within GFF2401at 55.159 kb on + strand, within GFF2401at 55.160 kb on - strand, within GFF2401at 55.160 kb on - strand, within GFF2401at 55.160 kb on - strand, within GFF2401at 55.160 kb on - strand, within GFF2401at 55.267 kb on + strand, within GFF2401at 55.267 kb on + strand, within GFF2401at 55.267 kb on + strand, within GFF2401at 55.267 kb on + strand, within GFF2401at 55.268 kb on - strand, within GFF2401at 55.300 kb on + strand, within GFF2401at 55.301 kb on - strand, within GFF2401at 55.301 kb on - strand, within GFF2401at 55.301 kb on - strand, within GFF2401at 55.301 kb on - strand, within GFF2401at 55.337 kb on - strand, within GFF2401at 55.346 kb on - strand, within GFF2401at 55.378 kb on + strand, within GFF2401at 55.378 kb on + strand, within GFF2401at 55.379 kb on - strand, within GFF2401at 55.420 kb on + strand, within GFF2401at 55.420 kb on + strand, within GFF2401at 55.420 kb on + strand, within GFF2401at 55.421 kb on - strand, within GFF2401at 55.421 kb on - strand, within GFF2401at 55.421 kb on - strand, within GFF2401at 55.426 kb on + strand, within GFF2401at 55.426 kb on + strand, within GFF2401at 55.472 kb on - strandat 55.652 kb on + strandat 55.652 kb on + strandat 55.992 kb on - strandat 56.174 kb on + strand, within GFF2402at 56.174 kb on + strand, within GFF2402at 56.174 kb on + strand, within GFF2402at 56.222 kb on + strand, within GFF2402at 56.237 kb on + strand, within GFF2402at 56.371 kb on + strand, within GFF2402at 56.371 kb on + strand, within GFF2402at 56.372 kb on - strand, within GFF2402at 56.375 kb on + strand, within GFF2402at 56.375 kb on + strand, within GFF2402at 56.376 kb on - strand, within GFF2402at 56.463 kb on - strand, within GFF2402at 56.573 kb on + strand, within GFF2402at 56.573 kb on + strand, within GFF2402at 56.574 kb on - strand, within GFF2402at 56.675 kb on + strand, within GFF2402at 56.675 kb on + strand, within GFF2402at 56.675 kb on + strand, within GFF2402at 56.675 kb on + strand, within GFF2402at 56.675 kb on + strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.883 kb on - strandat 56.952 kb on + strandat 56.955 kb on - strandat 57.006 kb on - strandat 57.080 kb on + strandat 57.196 kb on + strand, within GFF2403at 57.485 kb on + strand, within GFF2403at 57.633 kb on - strandat 57.633 kb on - strandat 57.639 kb on + strandat 57.640 kb on - strandat 57.640 kb on - strandat 57.777 kb on + strand, within GFF2404at 57.777 kb on + strand, within GFF2404at 57.778 kb on - strand, within GFF2404at 57.778 kb on - strand, within GFF2404at 57.778 kb on - strand, within GFF2404at 57.778 kb on - strand, within GFF2404at 57.778 kb on - strand, within GFF2404at 57.793 kb on - strand, within GFF2404

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
54,949 + GFF2401 0.66 +0.5
54,949 + GFF2401 0.66 +0.3
54,950 - GFF2401 0.66 +1.3
54,950 - GFF2401 0.66 +1.7
55,154 - GFF2401 0.76 +0.9
55,154 - GFF2401 0.76 -0.8
55,154 - GFF2401 0.76 -0.7
55,159 + GFF2401 0.76 -0.2
55,159 + GFF2401 0.76 +0.1
55,160 - GFF2401 0.76 +0.8
55,160 - GFF2401 0.76 +0.5
55,160 - GFF2401 0.76 +1.2
55,160 - GFF2401 0.76 +0.0
55,267 + GFF2401 0.81 -0.5
55,267 + GFF2401 0.81 +0.8
55,267 + GFF2401 0.81 +0.2
55,267 + GFF2401 0.81 +0.3
55,268 - GFF2401 0.81 +0.2
55,300 + GFF2401 0.83 +1.3
55,301 - GFF2401 0.83 -0.8
55,301 - GFF2401 0.83 +0.6
55,301 - GFF2401 0.83 +1.0
55,301 - GFF2401 0.83 +0.5
55,337 - GFF2401 0.85 -0.5
55,346 - GFF2401 0.85 +0.7
55,378 + GFF2401 0.87 +1.3
55,378 + GFF2401 0.87 +0.0
55,379 - GFF2401 0.87 -1.1
55,420 + GFF2401 0.89 +0.6
55,420 + GFF2401 0.89 +0.7
55,420 + GFF2401 0.89 +0.9
55,421 - GFF2401 0.89 +0.2
55,421 - GFF2401 0.89 -1.4
55,421 - GFF2401 0.89 +0.8
55,426 + GFF2401 0.89 -0.7
55,426 + GFF2401 0.89 -1.1
55,472 - +0.6
55,652 + +0.9
55,652 + -0.5
55,992 - +0.7
56,174 + GFF2402 0.26 +0.3
56,174 + GFF2402 0.26 -1.0
56,174 + GFF2402 0.26 +1.8
56,222 + GFF2402 0.31 +0.7
56,237 + GFF2402 0.33 -0.2
56,371 + GFF2402 0.46 +0.0
56,371 + GFF2402 0.46 -0.4
56,372 - GFF2402 0.46 -1.9
56,375 + GFF2402 0.47 +1.5
56,375 + GFF2402 0.47 +0.1
56,376 - GFF2402 0.47 -1.6
56,463 - GFF2402 0.56 +1.1
56,573 + GFF2402 0.67 +0.1
56,573 + GFF2402 0.67 +1.5
56,574 - GFF2402 0.67 -0.1
56,675 + GFF2402 0.78 -0.1
56,675 + GFF2402 0.78 -0.0
56,675 + GFF2402 0.78 +1.2
56,675 + GFF2402 0.78 -1.0
56,675 + GFF2402 0.78 +2.3
56,676 - GFF2402 0.78 +0.8
56,676 - GFF2402 0.78 +0.7
56,676 - GFF2402 0.78 -1.8
56,676 - GFF2402 0.78 +0.1
56,676 - GFF2402 0.78 +1.3
56,676 - GFF2402 0.78 +0.2
56,883 - +1.5
56,952 + +0.7
56,955 - +0.8
57,006 - +0.7
57,080 + +0.2
57,196 + GFF2403 0.20 -0.4
57,485 + GFF2403 0.82 +0.2
57,633 - -0.5
57,633 - +0.1
57,639 + +0.5
57,640 - +1.1
57,640 - +0.0
57,777 + GFF2404 0.13 +0.0
57,777 + GFF2404 0.13 +1.4
57,778 - GFF2404 0.13 -0.3
57,778 - GFF2404 0.13 +0.3
57,778 - GFF2404 0.13 +0.6
57,778 - GFF2404 0.13 +1.3
57,778 - GFF2404 0.13 -0.5
57,793 - GFF2404 0.14 +0.0

Or see this region's nucleotide sequence