Strain Fitness in Xanthobacter sp. DMC5 around GFF2401

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2400 and GFF2401 are separated by 85 nucleotidesGFF2401 and GFF2402 are separated by 266 nucleotides GFF2400 - 2-isopropylmalate synthase, at 51,962 to 53,524 GFF2400 GFF2401 - hypothetical protein, at 53,610 to 55,652 GFF2401 GFF2402 - hypothetical protein, at 55,919 to 56,893 GFF2402 Position (kb) 53 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 52.746 kb on + strand, within GFF2400at 52.746 kb on + strand, within GFF2400at 52.747 kb on - strand, within GFF2400at 52.833 kb on - strand, within GFF2400at 52.833 kb on - strand, within GFF2400at 52.906 kb on + strand, within GFF2400at 52.916 kb on + strand, within GFF2400at 53.022 kb on - strand, within GFF2400at 53.328 kb on - strand, within GFF2400at 53.431 kb on + strandat 53.456 kb on + strandat 53.456 kb on + strandat 53.564 kb on + strandat 53.564 kb on + strandat 54.104 kb on + strand, within GFF2401at 54.530 kb on + strand, within GFF2401at 54.530 kb on + strand, within GFF2401at 54.531 kb on - strand, within GFF2401at 54.548 kb on - strand, within GFF2401at 54.641 kb on - strand, within GFF2401at 54.757 kb on + strand, within GFF2401at 54.757 kb on + strand, within GFF2401at 54.757 kb on + strand, within GFF2401at 54.757 kb on + strand, within GFF2401at 54.758 kb on - strand, within GFF2401at 54.758 kb on - strand, within GFF2401at 54.758 kb on - strand, within GFF2401at 54.862 kb on + strand, within GFF2401at 54.862 kb on + strand, within GFF2401at 54.892 kb on + strand, within GFF2401at 54.893 kb on - strand, within GFF2401at 54.949 kb on + strand, within GFF2401at 54.949 kb on + strand, within GFF2401at 54.950 kb on - strand, within GFF2401at 54.950 kb on - strand, within GFF2401at 55.154 kb on - strand, within GFF2401at 55.154 kb on - strand, within GFF2401at 55.154 kb on - strand, within GFF2401at 55.159 kb on + strand, within GFF2401at 55.159 kb on + strand, within GFF2401at 55.160 kb on - strand, within GFF2401at 55.160 kb on - strand, within GFF2401at 55.160 kb on - strand, within GFF2401at 55.160 kb on - strand, within GFF2401at 55.267 kb on + strand, within GFF2401at 55.267 kb on + strand, within GFF2401at 55.267 kb on + strand, within GFF2401at 55.267 kb on + strand, within GFF2401at 55.268 kb on - strand, within GFF2401at 55.300 kb on + strand, within GFF2401at 55.301 kb on - strand, within GFF2401at 55.301 kb on - strand, within GFF2401at 55.301 kb on - strand, within GFF2401at 55.301 kb on - strand, within GFF2401at 55.337 kb on - strand, within GFF2401at 55.346 kb on - strand, within GFF2401at 55.378 kb on + strand, within GFF2401at 55.378 kb on + strand, within GFF2401at 55.379 kb on - strand, within GFF2401at 55.420 kb on + strand, within GFF2401at 55.420 kb on + strand, within GFF2401at 55.420 kb on + strand, within GFF2401at 55.421 kb on - strand, within GFF2401at 55.421 kb on - strand, within GFF2401at 55.421 kb on - strand, within GFF2401at 55.426 kb on + strand, within GFF2401at 55.426 kb on + strand, within GFF2401at 55.472 kb on - strandat 55.652 kb on + strandat 55.652 kb on + strandat 55.992 kb on - strandat 56.174 kb on + strand, within GFF2402at 56.174 kb on + strand, within GFF2402at 56.174 kb on + strand, within GFF2402at 56.222 kb on + strand, within GFF2402at 56.237 kb on + strand, within GFF2402at 56.371 kb on + strand, within GFF2402at 56.371 kb on + strand, within GFF2402at 56.372 kb on - strand, within GFF2402at 56.375 kb on + strand, within GFF2402at 56.375 kb on + strand, within GFF2402at 56.376 kb on - strand, within GFF2402at 56.463 kb on - strand, within GFF2402at 56.573 kb on + strand, within GFF2402at 56.573 kb on + strand, within GFF2402at 56.574 kb on - strand, within GFF2402

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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52,746 + GFF2400 0.50 -1.5
52,746 + GFF2400 0.50 -1.3
52,747 - GFF2400 0.50 -1.9
52,833 - GFF2400 0.56 +0.3
52,833 - GFF2400 0.56 -1.1
52,906 + GFF2400 0.60 -1.4
52,916 + GFF2400 0.61 -2.6
53,022 - GFF2400 0.68 -2.3
53,328 - GFF2400 0.87 -0.7
53,431 + +0.8
53,456 + -0.8
53,456 + -1.2
53,564 + +0.7
53,564 + +0.7
54,104 + GFF2401 0.24 +1.2
54,530 + GFF2401 0.45 +0.7
54,530 + GFF2401 0.45 +1.0
54,531 - GFF2401 0.45 +0.6
54,548 - GFF2401 0.46 -0.5
54,641 - GFF2401 0.50 +0.0
54,757 + GFF2401 0.56 +1.3
54,757 + GFF2401 0.56 +0.6
54,757 + GFF2401 0.56 +1.3
54,757 + GFF2401 0.56 -1.0
54,758 - GFF2401 0.56 -0.2
54,758 - GFF2401 0.56 +0.9
54,758 - GFF2401 0.56 +0.3
54,862 + GFF2401 0.61 +0.3
54,862 + GFF2401 0.61 +0.4
54,892 + GFF2401 0.63 -1.5
54,893 - GFF2401 0.63 +1.3
54,949 + GFF2401 0.66 +0.5
54,949 + GFF2401 0.66 +0.3
54,950 - GFF2401 0.66 +1.3
54,950 - GFF2401 0.66 +1.7
55,154 - GFF2401 0.76 +0.9
55,154 - GFF2401 0.76 -0.8
55,154 - GFF2401 0.76 -0.7
55,159 + GFF2401 0.76 -0.2
55,159 + GFF2401 0.76 +0.1
55,160 - GFF2401 0.76 +0.8
55,160 - GFF2401 0.76 +0.5
55,160 - GFF2401 0.76 +1.2
55,160 - GFF2401 0.76 +0.0
55,267 + GFF2401 0.81 -0.5
55,267 + GFF2401 0.81 +0.8
55,267 + GFF2401 0.81 +0.2
55,267 + GFF2401 0.81 +0.3
55,268 - GFF2401 0.81 +0.2
55,300 + GFF2401 0.83 +1.3
55,301 - GFF2401 0.83 -0.8
55,301 - GFF2401 0.83 +0.6
55,301 - GFF2401 0.83 +1.0
55,301 - GFF2401 0.83 +0.5
55,337 - GFF2401 0.85 -0.5
55,346 - GFF2401 0.85 +0.7
55,378 + GFF2401 0.87 +1.3
55,378 + GFF2401 0.87 +0.0
55,379 - GFF2401 0.87 -1.1
55,420 + GFF2401 0.89 +0.6
55,420 + GFF2401 0.89 +0.7
55,420 + GFF2401 0.89 +0.9
55,421 - GFF2401 0.89 +0.2
55,421 - GFF2401 0.89 -1.4
55,421 - GFF2401 0.89 +0.8
55,426 + GFF2401 0.89 -0.7
55,426 + GFF2401 0.89 -1.1
55,472 - +0.6
55,652 + +0.9
55,652 + -0.5
55,992 - +0.7
56,174 + GFF2402 0.26 +0.3
56,174 + GFF2402 0.26 -1.0
56,174 + GFF2402 0.26 +1.8
56,222 + GFF2402 0.31 +0.7
56,237 + GFF2402 0.33 -0.2
56,371 + GFF2402 0.46 +0.0
56,371 + GFF2402 0.46 -0.4
56,372 - GFF2402 0.46 -1.9
56,375 + GFF2402 0.47 +1.5
56,375 + GFF2402 0.47 +0.1
56,376 - GFF2402 0.47 -1.6
56,463 - GFF2402 0.56 +1.1
56,573 + GFF2402 0.67 +0.1
56,573 + GFF2402 0.67 +1.5
56,574 - GFF2402 0.67 -0.1

Or see this region's nucleotide sequence