Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2383 and GFF2384 overlap by 4 nucleotides GFF2384 and GFF2385 overlap by 4 nucleotides GFF2385 and GFF2386 are separated by 111 nucleotides
GFF2383 - Sulfate/thiosulfate import ATP-binding protein CysA, at 36,469 to 37,512
GFF2383
GFF2384 - Sulfate transport system permease protein CysW, at 37,509 to 38,435
GFF2384
GFF2385 - Sulfate transport system permease protein CysT, at 38,432 to 39,286
GFF2385
GFF2386 - Sulfate-binding protein, at 39,398 to 40,414
GFF2386
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 37.618 kb on + strand, within GFF2384 at 37.618 kb on + strand, within GFF2384 at 37.627 kb on + strand, within GFF2384 at 37.627 kb on + strand, within GFF2384 at 37.954 kb on + strand, within GFF2384 at 37.993 kb on + strand, within GFF2384 at 37.993 kb on + strand, within GFF2384 at 37.993 kb on + strand, within GFF2384 at 37.993 kb on + strand, within GFF2384 at 37.993 kb on + strand, within GFF2384 at 37.994 kb on - strand, within GFF2384 at 37.994 kb on - strand, within GFF2384 at 37.994 kb on - strand, within GFF2384 at 37.994 kb on - strand, within GFF2384 at 37.994 kb on - strand, within GFF2384 at 38.037 kb on + strand, within GFF2384 at 38.037 kb on + strand, within GFF2384 at 38.038 kb on - strand, within GFF2384 at 38.038 kb on - strand, within GFF2384 at 38.197 kb on + strand, within GFF2384 at 38.197 kb on + strand, within GFF2384 at 38.197 kb on + strand, within GFF2384 at 38.227 kb on + strand, within GFF2384 at 38.227 kb on + strand, within GFF2384 at 38.347 kb on + strand at 38.348 kb on - strand at 38.348 kb on - strand at 38.544 kb on + strand, within GFF2385 at 38.545 kb on - strand, within GFF2385 at 38.634 kb on + strand, within GFF2385 at 38.691 kb on - strand, within GFF2385 at 38.691 kb on - strand, within GFF2385 at 38.913 kb on + strand, within GFF2385 at 38.914 kb on - strand, within GFF2385 at 39.004 kb on - strand, within GFF2385 at 39.007 kb on - strand, within GFF2385 at 39.295 kb on + strand at 39.295 kb on + strand at 39.295 kb on + strand at 39.296 kb on - strand at 39.296 kb on - strand at 39.298 kb on - strand at 39.298 kb on - strand at 39.552 kb on + strand, within GFF2386 at 39.553 kb on - strand, within GFF2386 at 39.556 kb on - strand, within GFF2386 at 39.556 kb on - strand, within GFF2386 at 39.591 kb on + strand, within GFF2386 at 39.591 kb on + strand, within GFF2386 at 39.591 kb on + strand, within GFF2386 at 39.592 kb on - strand, within GFF2386 at 39.592 kb on - strand, within GFF2386 at 39.592 kb on - strand, within GFF2386 at 39.607 kb on - strand, within GFF2386 at 39.741 kb on + strand, within GFF2386 at 39.741 kb on + strand, within GFF2386 at 39.741 kb on + strand, within GFF2386 at 39.741 kb on + strand, within GFF2386 at 39.741 kb on + strand, within GFF2386 at 39.742 kb on - strand, within GFF2386 at 39.843 kb on + strand, within GFF2386 at 39.844 kb on - strand, within GFF2386 at 39.921 kb on + strand, within GFF2386 at 39.922 kb on - strand, within GFF2386 at 39.922 kb on - strand, within GFF2386 at 40.054 kb on - strand, within GFF2386 at 40.132 kb on - strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 37,618 + GFF2384 0.12 -1.0 37,618 + GFF2384 0.12 -0.1 37,627 + GFF2384 0.13 -1.4 37,627 + GFF2384 0.13 -1.1 37,954 + GFF2384 0.48 -0.1 37,993 + GFF2384 0.52 -0.5 37,993 + GFF2384 0.52 -0.4 37,993 + GFF2384 0.52 -0.5 37,993 + GFF2384 0.52 -0.8 37,993 + GFF2384 0.52 -0.2 37,994 - GFF2384 0.52 +1.3 37,994 - GFF2384 0.52 +0.2 37,994 - GFF2384 0.52 -0.6 37,994 - GFF2384 0.52 -0.3 37,994 - GFF2384 0.52 +0.4 38,037 + GFF2384 0.57 +0.5 38,037 + GFF2384 0.57 -0.3 38,038 - GFF2384 0.57 -0.5 38,038 - GFF2384 0.57 -0.6 38,197 + GFF2384 0.74 +0.7 38,197 + GFF2384 0.74 -1.0 38,197 + GFF2384 0.74 -0.6 38,227 + GFF2384 0.77 +0.4 38,227 + GFF2384 0.77 +0.2 38,347 + -1.0 38,348 - -0.9 38,348 - -0.4 38,544 + GFF2385 0.13 +1.0 38,545 - GFF2385 0.13 +0.5 38,634 + GFF2385 0.24 +0.1 38,691 - GFF2385 0.30 -0.4 38,691 - GFF2385 0.30 -1.2 38,913 + GFF2385 0.56 -1.3 38,914 - GFF2385 0.56 -0.4 39,004 - GFF2385 0.67 -1.0 39,007 - GFF2385 0.67 -0.7 39,295 + -0.7 39,295 + -1.3 39,295 + +0.0 39,296 - +0.1 39,296 - +0.0 39,298 - +1.4 39,298 - -2.1 39,552 + GFF2386 0.15 -0.9 39,553 - GFF2386 0.15 -2.8 39,556 - GFF2386 0.16 -0.6 39,556 - GFF2386 0.16 -2.1 39,591 + GFF2386 0.19 -0.1 39,591 + GFF2386 0.19 -1.0 39,591 + GFF2386 0.19 +0.1 39,592 - GFF2386 0.19 -0.3 39,592 - GFF2386 0.19 -0.3 39,592 - GFF2386 0.19 +0.6 39,607 - GFF2386 0.21 -0.1 39,741 + GFF2386 0.34 +0.1 39,741 + GFF2386 0.34 -0.7 39,741 + GFF2386 0.34 -1.0 39,741 + GFF2386 0.34 -1.2 39,741 + GFF2386 0.34 -0.3 39,742 - GFF2386 0.34 -0.8 39,843 + GFF2386 0.44 +1.1 39,844 - GFF2386 0.44 -0.6 39,921 + GFF2386 0.51 +1.9 39,922 - GFF2386 0.52 -0.7 39,922 - GFF2386 0.52 -1.3 40,054 - GFF2386 0.65 +0.6 40,132 - GFF2386 0.72 -0.7 40,284 + GFF2386 0.87 -0.5 40,284 + GFF2386 0.87 +0.3 40,284 + GFF2386 0.87 -0.1 40,284 + GFF2386 0.87 -0.6 40,285 - GFF2386 0.87 +0.0 40,285 - GFF2386 0.87 +0.5 40,285 - GFF2386 0.87 -1.0 40,285 - GFF2386 0.87 -0.7 40,285 - GFF2386 0.87 -0.3 40,285 - GFF2386 0.87 -0.1
Or see this region's nucleotide sequence