Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2372 and GFF2373 are separated by 57 nucleotides GFF2373 and GFF2374 are separated by 22 nucleotides GFF2374 and GFF2375 are separated by 178 nucleotides
GFF2372 - hypothetical protein, at 23,252 to 26,005
GFF2372
GFF2373 - hypothetical protein, at 26,063 to 26,398
GFF2373
GFF2374 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 26,421 to 27,290
GFF2374
GFF2375 - Beta-barrel assembly-enhancing protease, at 27,469 to 29,208
GFF2375
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 25.544 kb on + strand, within GFF2372 at 25.544 kb on + strand, within GFF2372 at 25.652 kb on + strand, within GFF2372 at 25.652 kb on + strand, within GFF2372 at 25.653 kb on - strand, within GFF2372 at 25.727 kb on + strand, within GFF2372 at 25.727 kb on + strand, within GFF2372 at 25.728 kb on - strand, within GFF2372 at 25.728 kb on - strand, within GFF2372 at 25.728 kb on - strand, within GFF2372 at 25.940 kb on + strand at 26.052 kb on - strand at 26.187 kb on + strand, within GFF2373 at 26.187 kb on + strand, within GFF2373 at 26.187 kb on + strand, within GFF2373 at 26.187 kb on + strand, within GFF2373 at 26.187 kb on + strand, within GFF2373 at 26.188 kb on - strand, within GFF2373 at 26.188 kb on - strand, within GFF2373 at 26.188 kb on - strand, within GFF2373 at 26.188 kb on - strand, within GFF2373 at 26.199 kb on + strand, within GFF2373 at 26.199 kb on + strand, within GFF2373 at 26.199 kb on + strand, within GFF2373 at 27.300 kb on + strand at 27.300 kb on + strand at 27.300 kb on + strand at 27.366 kb on - strand at 27.366 kb on - strand at 27.577 kb on - strand at 27.591 kb on + strand at 27.595 kb on + strand at 27.595 kb on + strand at 27.596 kb on - strand at 27.596 kb on - strand at 27.596 kb on - strand at 27.649 kb on + strand, within GFF2375 at 27.650 kb on - strand, within GFF2375 at 27.835 kb on + strand, within GFF2375 at 27.836 kb on - strand, within GFF2375 at 27.836 kb on - strand, within GFF2375 at 27.986 kb on - strand, within GFF2375 at 28.111 kb on + strand, within GFF2375 at 28.112 kb on - strand, within GFF2375 at 28.112 kb on - strand, within GFF2375 at 28.112 kb on - strand, within GFF2375 at 28.140 kb on + strand, within GFF2375 at 28.141 kb on - strand, within GFF2375 at 28.162 kb on + strand, within GFF2375 at 28.198 kb on - strand, within GFF2375 at 28.288 kb on + strand, within GFF2375
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 25,544 + GFF2372 0.83 -0.7 25,544 + GFF2372 0.83 -2.3 25,652 + GFF2372 0.87 +0.5 25,652 + GFF2372 0.87 +0.2 25,653 - GFF2372 0.87 -0.2 25,727 + GFF2372 0.90 +0.2 25,727 + GFF2372 0.90 +0.5 25,728 - GFF2372 0.90 +1.7 25,728 - GFF2372 0.90 +1.2 25,728 - GFF2372 0.90 +0.5 25,940 + -1.3 26,052 - +0.0 26,187 + GFF2373 0.37 -0.6 26,187 + GFF2373 0.37 +0.4 26,187 + GFF2373 0.37 +0.6 26,187 + GFF2373 0.37 +0.4 26,187 + GFF2373 0.37 -1.7 26,188 - GFF2373 0.37 -1.8 26,188 - GFF2373 0.37 +0.1 26,188 - GFF2373 0.37 -0.1 26,188 - GFF2373 0.37 -1.3 26,199 + GFF2373 0.40 +0.9 26,199 + GFF2373 0.40 -0.5 26,199 + GFF2373 0.40 -0.4 27,300 + +1.2 27,300 + -1.1 27,300 + -1.0 27,366 - +0.0 27,366 - +0.5 27,577 - +1.6 27,591 + +1.0 27,595 + +2.4 27,595 + +2.4 27,596 - +2.0 27,596 - +1.9 27,596 - +2.6 27,649 + GFF2375 0.10 +1.9 27,650 - GFF2375 0.10 +1.8 27,835 + GFF2375 0.21 +2.1 27,836 - GFF2375 0.21 +1.7 27,836 - GFF2375 0.21 +2.0 27,986 - GFF2375 0.30 +1.9 28,111 + GFF2375 0.37 +2.8 28,112 - GFF2375 0.37 +1.7 28,112 - GFF2375 0.37 +1.7 28,112 - GFF2375 0.37 +1.8 28,140 + GFF2375 0.39 +2.0 28,141 - GFF2375 0.39 +1.8 28,162 + GFF2375 0.40 +1.9 28,198 - GFF2375 0.42 +2.2 28,288 + GFF2375 0.47 +2.1
Or see this region's nucleotide sequence