Strain Fitness in Xanthobacter sp. DMC5 around GFF2371

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2369 and GFF2370 are separated by 72 nucleotidesGFF2370 and GFF2371 are separated by 18 nucleotidesGFF2371 and GFF2372 are separated by 135 nucleotides GFF2369 - Glutamine-dependent NAD(+) synthetase, at 20,489 to 22,153 GFF2369 GFF2370 - hypothetical protein, at 22,226 to 22,810 GFF2370 GFF2371 - hypothetical protein, at 22,829 to 23,116 GFF2371 GFF2372 - hypothetical protein, at 23,252 to 26,005 GFF2372 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1at 21.930 kb on - strand, within GFF2369at 22.122 kb on - strandat 22.151 kb on + strandat 22.152 kb on - strandat 22.280 kb on + strandat 22.281 kb on - strandat 22.281 kb on - strandat 22.281 kb on - strandat 22.468 kb on + strand, within GFF2370at 22.757 kb on - strandat 23.136 kb on - strandat 23.945 kb on + strand, within GFF2372

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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21,930 - GFF2369 0.87 +0.6
22,122 - -1.3
22,151 + +1.5
22,152 - -0.1
22,280 + +0.5
22,281 - +0.5
22,281 - +0.6
22,281 - -0.1
22,468 + GFF2370 0.41 -0.4
22,757 - -0.1
23,136 - -0.1
23,945 + GFF2372 0.25 +1.2

Or see this region's nucleotide sequence