Strain Fitness in Xanthobacter sp. DMC5 around GFF2365

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2363 and GFF2364 are separated by 122 nucleotidesGFF2364 and GFF2365 are separated by 67 nucleotidesGFF2365 and GFF2366 are separated by 125 nucleotidesGFF2366 and GFF2367 overlap by 26 nucleotides GFF2363 - HTH-type transcriptional regulator HdfR, at 15,804 to 16,718 GFF2363 GFF2364 - hypothetical protein, at 16,841 to 17,269 GFF2364 GFF2365 - Octaprenyl diphosphate synthase, at 17,337 to 18,344 GFF2365 GFF2366 - hypothetical protein, at 18,470 to 18,697 GFF2366 GFF2367 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 18,672 to 19,445 GFF2367 Position (kb) 17 18 19Strain fitness (log2 ratio) -2 -1 0 1at 16.781 kb on - strandat 17.054 kb on + strand, within GFF2364at 17.108 kb on + strand, within GFF2364at 17.108 kb on + strand, within GFF2364at 17.324 kb on + strandat 18.382 kb on - strandat 18.466 kb on + strandat 18.466 kb on + strandat 18.467 kb on - strandat 18.543 kb on + strand, within GFF2366at 18.543 kb on + strand, within GFF2366

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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16,781 - +0.5
17,054 + GFF2364 0.50 -0.6
17,108 + GFF2364 0.62 -0.1
17,108 + GFF2364 0.62 -0.3
17,324 + +0.1
18,382 - +0.5
18,466 + +0.8
18,466 + -0.5
18,467 - -2.3
18,543 + GFF2366 0.32 -0.8
18,543 + GFF2366 0.32 -0.3

Or see this region's nucleotide sequence