Strain Fitness in Xanthobacter sp. DMC5 around GFF235

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF233 and GFF234 are separated by 144 nucleotidesGFF234 and GFF235 are separated by 51 nucleotidesGFF235 and GFF236 are separated by 58 nucleotides GFF233 - hypothetical protein, at 244,473 to 245,270 GFF233 GFF234 - 3-dehydroquinate dehydratase, at 245,415 to 245,855 GFF234 GFF235 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 245,907 to 246,383 GFF235 GFF236 - Biotin carboxylase, at 246,442 to 247,800 GFF236 Position (kb) 245 246 247Strain fitness (log2 ratio) -1 0 1at 245.268 kb on + strandat 245.268 kb on + strandat 245.268 kb on + strandat 245.268 kb on + strandat 245.268 kb on + strandat 245.268 kb on + strandat 245.269 kb on - strandat 245.365 kb on + strandat 245.365 kb on + strandat 245.367 kb on + strandat 245.367 kb on + strandat 245.367 kb on + strandat 245.853 kb on + strandat 245.853 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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245,268 + +0.9
245,268 + +0.4
245,268 + -0.3
245,268 + +0.1
245,268 + -0.6
245,268 + +0.0
245,269 - -0.3
245,365 + +0.5
245,365 + +1.2
245,367 + -0.5
245,367 + -0.8
245,367 + +0.1
245,853 + +0.8
245,853 + -1.1

Or see this region's nucleotide sequence