Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2340 and GFF2341 are separated by 20 nucleotides GFF2341 and GFF2342 are separated by 54 nucleotides GFF2342 and GFF2343 are separated by 229 nucleotides
GFF2340 - Phosphate import ATP-binding protein PstB, at 1,051,248 to 1,052,072
GFF2340
GFF2341 - Phosphate-specific transport system accessory protein PhoU, at 1,052,093 to 1,052,827
GFF2341
GFF2342 - Phosphate regulon transcriptional regulatory protein PhoB, at 1,052,882 to 1,053,583
GFF2342
GFF2343 - hypothetical protein, at 1,053,813 to 1,055,195
GFF2343
Position (kb) 1052
1053
1054 Strain fitness (log2 ratio) -1
0
1
2 at 1052.085 kb on + strand at 1052.863 kb on + strand at 1052.873 kb on + strand at 1052.873 kb on + strand at 1054.171 kb on + strand, within GFF2343 at 1054.172 kb on - strand, within GFF2343 at 1054.172 kb on - strand, within GFF2343 at 1054.208 kb on - strand, within GFF2343 at 1054.234 kb on + strand, within GFF2343 at 1054.234 kb on + strand, within GFF2343 at 1054.404 kb on + strand, within GFF2343
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 1,052,085 + -1.0 1,052,863 + +0.6 1,052,873 + -0.9 1,052,873 + +1.1 1,054,171 + GFF2343 0.26 +0.5 1,054,172 - GFF2343 0.26 -1.4 1,054,172 - GFF2343 0.26 +0.2 1,054,208 - GFF2343 0.29 -0.6 1,054,234 + GFF2343 0.30 +0.0 1,054,234 + GFF2343 0.30 -0.6 1,054,404 + GFF2343 0.43 +2.1
Or see this region's nucleotide sequence