Strain Fitness in Xanthobacter sp. DMC5 around GFF2340

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2338 and GFF2339 are separated by 18 nucleotidesGFF2339 and GFF2340 are separated by 87 nucleotidesGFF2340 and GFF2341 are separated by 20 nucleotidesGFF2341 and GFF2342 are separated by 54 nucleotides GFF2338 - Phosphate transport system permease protein PstC, at 1,049,331 to 1,050,308 GFF2338 GFF2339 - Phosphate transport system permease protein PstA, at 1,050,327 to 1,051,160 GFF2339 GFF2340 - Phosphate import ATP-binding protein PstB, at 1,051,248 to 1,052,072 GFF2340 GFF2341 - Phosphate-specific transport system accessory protein PhoU, at 1,052,093 to 1,052,827 GFF2341 GFF2342 - Phosphate regulon transcriptional regulatory protein PhoB, at 1,052,882 to 1,053,583 GFF2342 Position (kb) 1051 1052 1053Strain fitness (log2 ratio) -1 0 1at 1050.320 kb on + strandat 1051.228 kb on + strandat 1051.228 kb on + strandat 1051.229 kb on - strandat 1052.085 kb on + strandat 1052.863 kb on + strandat 1052.873 kb on + strandat 1052.873 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,050,320 + -1.2
1,051,228 + -1.4
1,051,228 + +1.4
1,051,229 - +0.0
1,052,085 + -1.0
1,052,863 + +0.6
1,052,873 + -0.9
1,052,873 + +1.1

Or see this region's nucleotide sequence