Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF232 and GFF233 are separated by 35 nucleotides GFF233 and GFF234 are separated by 144 nucleotides GFF234 and GFF235 are separated by 51 nucleotides
GFF232 - Beta-barrel assembly-enhancing protease, at 243,124 to 244,437
GFF232
GFF233 - hypothetical protein, at 244,473 to 245,270
GFF233
GFF234 - 3-dehydroquinate dehydratase, at 245,415 to 245,855
GFF234
GFF235 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 245,907 to 246,383
GFF235
Position (kb) 244
245
246 Strain fitness (log2 ratio) -1
0
1 at 243.565 kb on + strand, within GFF232 at 243.565 kb on + strand, within GFF232 at 243.610 kb on + strand, within GFF232 at 243.706 kb on + strand, within GFF232 at 243.706 kb on + strand, within GFF232 at 243.779 kb on - strand, within GFF232 at 244.244 kb on - strand, within GFF232 at 244.294 kb on + strand, within GFF232 at 245.268 kb on + strand at 245.268 kb on + strand at 245.268 kb on + strand at 245.268 kb on + strand at 245.268 kb on + strand at 245.268 kb on + strand at 245.269 kb on - strand at 245.365 kb on + strand at 245.365 kb on + strand at 245.367 kb on + strand at 245.367 kb on + strand at 245.367 kb on + strand at 245.853 kb on + strand at 245.853 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 243,565 + GFF232 0.34 -0.4 243,565 + GFF232 0.34 -0.4 243,610 + GFF232 0.37 -1.2 243,706 + GFF232 0.44 -0.1 243,706 + GFF232 0.44 -0.9 243,779 - GFF232 0.50 +0.4 244,244 - GFF232 0.85 -0.2 244,294 + GFF232 0.89 +1.3 245,268 + +0.9 245,268 + +0.4 245,268 + -0.3 245,268 + +0.1 245,268 + -0.6 245,268 + +0.0 245,269 - -0.3 245,365 + +0.5 245,365 + +1.2 245,367 + -0.5 245,367 + -0.8 245,367 + +0.1 245,853 + +0.8 245,853 + -1.1
Or see this region's nucleotide sequence