Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF231 and GFF232 are separated by 389 nucleotides GFF232 and GFF233 are separated by 35 nucleotides GFF233 and GFF234 are separated by 144 nucleotides
GFF231 - Aspartate/prephenate aminotransferase, at 241,565 to 242,734
GFF231
GFF232 - Beta-barrel assembly-enhancing protease, at 243,124 to 244,437
GFF232
GFF233 - hypothetical protein, at 244,473 to 245,270
GFF233
GFF234 - 3-dehydroquinate dehydratase, at 245,415 to 245,855
GFF234
Position (kb) 243
244
245 Strain fitness (log2 ratio) -1
0
1 at 242.484 kb on + strand, within GFF231 at 242.534 kb on - strand, within GFF231 at 242.895 kb on - strand at 242.934 kb on - strand at 243.184 kb on + strand at 243.184 kb on + strand at 243.185 kb on - strand at 243.565 kb on + strand, within GFF232 at 243.565 kb on + strand, within GFF232 at 243.610 kb on + strand, within GFF232 at 243.706 kb on + strand, within GFF232 at 243.706 kb on + strand, within GFF232 at 243.779 kb on - strand, within GFF232 at 244.244 kb on - strand, within GFF232 at 244.294 kb on + strand, within GFF232 at 245.268 kb on + strand at 245.268 kb on + strand at 245.268 kb on + strand at 245.268 kb on + strand at 245.268 kb on + strand at 245.268 kb on + strand at 245.269 kb on - strand at 245.365 kb on + strand at 245.365 kb on + strand at 245.367 kb on + strand at 245.367 kb on + strand at 245.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 242,484 + GFF231 0.79 -0.8 242,534 - GFF231 0.83 -1.3 242,895 - -0.6 242,934 - +0.2 243,184 + +0.2 243,184 + +0.2 243,185 - -0.4 243,565 + GFF232 0.34 -0.4 243,565 + GFF232 0.34 -0.4 243,610 + GFF232 0.37 -1.2 243,706 + GFF232 0.44 -0.1 243,706 + GFF232 0.44 -0.9 243,779 - GFF232 0.50 +0.4 244,244 - GFF232 0.85 -0.2 244,294 + GFF232 0.89 +1.3 245,268 + +0.9 245,268 + +0.4 245,268 + -0.3 245,268 + +0.1 245,268 + -0.6 245,268 + +0.0 245,269 - -0.3 245,365 + +0.5 245,365 + +1.2 245,367 + -0.5 245,367 + -0.8 245,367 + +0.1
Or see this region's nucleotide sequence