Strain Fitness in Xanthobacter sp. DMC5 around GFF2301

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2299 and GFF2300 are separated by 183 nucleotidesGFF2300 and GFF2301 are separated by 331 nucleotidesGFF2301 and GFF2302 are separated by 232 nucleotides GFF2299 - hypothetical protein, at 1,010,938 to 1,011,450 GFF2299 GFF2300 - hypothetical protein, at 1,011,634 to 1,012,071 GFF2300 GFF2301 - 30S ribosomal protein S15, at 1,012,403 to 1,012,672 GFF2301 GFF2302 - Polyribonucleotide nucleotidyltransferase, at 1,012,905 to 1,015,085 GFF2302 Position (kb) 1012 1013Strain fitness (log2 ratio) -1 0 1at 1011.571 kb on + strandat 1011.571 kb on + strandat 1011.571 kb on + strandat 1012.154 kb on + strandat 1012.213 kb on + strandat 1012.213 kb on + strandat 1012.735 kb on + strandat 1012.735 kb on + strandat 1012.735 kb on + strandat 1012.735 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,011,571 + +1.2
1,011,571 + -0.5
1,011,571 + +0.2
1,012,154 + +1.0
1,012,213 + +0.7
1,012,213 + -0.5
1,012,735 + -0.4
1,012,735 + +0.1
1,012,735 + -0.9
1,012,735 + +0.2

Or see this region's nucleotide sequence