Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF228 and GFF229 are separated by 166 nucleotides GFF229 and GFF230 overlap by 64 nucleotides GFF230 and GFF231 are separated by 114 nucleotides
GFF228 - hypothetical protein, at 239,594 to 240,004
GFF228
GFF229 - hypothetical protein, at 240,171 to 240,842
GFF229
GFF230 - Leucyl/phenylalanyl-tRNA--protein transferase, at 240,779 to 241,450
GFF230
GFF231 - Aspartate/prephenate aminotransferase, at 241,565 to 242,734
GFF231
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1 at 239.979 kb on - strand at 240.037 kb on - strand at 240.840 kb on + strand at 240.840 kb on + strand at 240.840 kb on + strand at 241.002 kb on - strand, within GFF230 at 241.071 kb on + strand, within GFF230 at 241.146 kb on + strand, within GFF230 at 241.341 kb on + strand, within GFF230 at 241.341 kb on + strand, within GFF230 at 241.341 kb on + strand, within GFF230 at 241.341 kb on + strand, within GFF230 at 241.342 kb on - strand, within GFF230 at 241.632 kb on + strand at 241.764 kb on + strand, within GFF231 at 241.765 kb on - strand, within GFF231 at 241.770 kb on + strand, within GFF231 at 241.770 kb on + strand, within GFF231 at 241.771 kb on - strand, within GFF231 at 241.771 kb on - strand, within GFF231 at 241.771 kb on - strand, within GFF231 at 241.771 kb on - strand, within GFF231 at 241.771 kb on - strand, within GFF231 at 241.851 kb on + strand, within GFF231 at 241.852 kb on - strand, within GFF231 at 242.022 kb on + strand, within GFF231 at 242.022 kb on + strand, within GFF231 at 242.022 kb on + strand, within GFF231 at 242.106 kb on + strand, within GFF231 at 242.106 kb on + strand, within GFF231 at 242.106 kb on + strand, within GFF231
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 239,979 - -0.1 240,037 - -0.0 240,840 + -0.9 240,840 + -0.5 240,840 + -0.4 241,002 - GFF230 0.33 +0.6 241,071 + GFF230 0.43 -0.1 241,146 + GFF230 0.55 -1.0 241,341 + GFF230 0.84 -0.6 241,341 + GFF230 0.84 +1.0 241,341 + GFF230 0.84 -0.9 241,341 + GFF230 0.84 -0.1 241,342 - GFF230 0.84 +0.2 241,632 + -1.1 241,764 + GFF231 0.17 +1.6 241,765 - GFF231 0.17 -1.8 241,770 + GFF231 0.18 +0.2 241,770 + GFF231 0.18 -1.1 241,771 - GFF231 0.18 -1.9 241,771 - GFF231 0.18 -1.1 241,771 - GFF231 0.18 -0.4 241,771 - GFF231 0.18 -2.0 241,771 - GFF231 0.18 -1.3 241,851 + GFF231 0.24 -0.8 241,852 - GFF231 0.25 +0.9 242,022 + GFF231 0.39 +0.8 242,022 + GFF231 0.39 -0.7 242,022 + GFF231 0.39 -1.1 242,106 + GFF231 0.46 -1.5 242,106 + GFF231 0.46 -0.7 242,106 + GFF231 0.46 -0.7
Or see this region's nucleotide sequence