Strain Fitness in Xanthobacter sp. DMC5 around GFF2298

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2297 and GFF2298 overlap by 1 nucleotidesGFF2298 and GFF2299 are separated by 603 nucleotides GFF2297 - Transcription termination/antitermination protein NusA, at 1,007,879 to 1,009,471 GFF2297 GFF2298 - Ribosome maturation factor RimP, at 1,009,471 to 1,010,334 GFF2298 GFF2299 - hypothetical protein, at 1,010,938 to 1,011,450 GFF2299 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -1 0 1at 1009.552 kb on - strandat 1010.501 kb on - strandat 1010.593 kb on - strandat 1011.194 kb on + strand, within GFF2299at 1011.194 kb on + strand, within GFF2299at 1011.195 kb on - strand, within GFF2299

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,009,552 - -0.1
1,010,501 - +0.0
1,010,593 - -0.6
1,011,194 + GFF2299 0.50 +0.1
1,011,194 + GFF2299 0.50 +0.7
1,011,195 - GFF2299 0.50 -1.1

Or see this region's nucleotide sequence