Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2289 and GFF2290 are separated by 17 nucleotides GFF2290 and GFF2291 are separated by 274 nucleotides GFF2291 and GFF2292 are separated by 64 nucleotides
GFF2289 - hypothetical protein, at 996,811 to 997,863
GFF2289
GFF2290 - Aspartate aminotransferase, at 997,881 to 999,116
GFF2290
GFF2291 - putative malonic semialdehyde reductase RutE, at 999,391 to 999,993
GFF2291
GFF2292 - Heme-binding protein A, at 1,000,058 to 1,001,665
GFF2292
Position (kb) 997
998
999
1000 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 996.936 kb on - strand, within GFF2289 at 997.097 kb on + strand, within GFF2289 at 997.098 kb on - strand, within GFF2289 at 997.098 kb on - strand, within GFF2289 at 997.098 kb on - strand, within GFF2289 at 997.681 kb on + strand, within GFF2289 at 998.054 kb on + strand, within GFF2290 at 998.055 kb on - strand, within GFF2290 at 998.055 kb on - strand, within GFF2290 at 998.104 kb on + strand, within GFF2290 at 998.105 kb on - strand, within GFF2290 at 998.105 kb on - strand, within GFF2290 at 998.279 kb on - strand, within GFF2290 at 998.458 kb on + strand, within GFF2290 at 998.458 kb on + strand, within GFF2290 at 998.458 kb on + strand, within GFF2290 at 998.656 kb on + strand, within GFF2290 at 998.656 kb on + strand, within GFF2290 at 998.824 kb on + strand, within GFF2290 at 998.887 kb on + strand, within GFF2290 at 998.888 kb on - strand, within GFF2290 at 999.068 kb on - strand at 999.184 kb on + strand at 999.185 kb on - strand at 999.186 kb on + strand at 999.187 kb on - strand at 999.193 kb on + strand at 999.330 kb on + strand at 999.330 kb on + strand at 999.331 kb on - strand at 999.331 kb on - strand at 999.331 kb on - strand at 999.331 kb on - strand at 999.331 kb on - strand at 999.331 kb on - strand at 999.331 kb on - strand at 999.444 kb on - strand at 999.511 kb on + strand, within GFF2291 at 999.511 kb on + strand, within GFF2291 at 999.512 kb on - strand, within GFF2291 at 999.512 kb on - strand, within GFF2291 at 999.512 kb on - strand, within GFF2291 at 999.526 kb on + strand, within GFF2291 at 999.527 kb on - strand, within GFF2291 at 999.562 kb on + strand, within GFF2291 at 999.563 kb on - strand, within GFF2291 at 999.563 kb on - strand, within GFF2291 at 999.563 kb on - strand, within GFF2291 at 999.710 kb on - strand, within GFF2291 at 999.794 kb on - strand, within GFF2291
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 996,936 - GFF2289 0.12 +0.5 997,097 + GFF2289 0.27 +0.0 997,098 - GFF2289 0.27 -0.1 997,098 - GFF2289 0.27 +0.3 997,098 - GFF2289 0.27 -0.5 997,681 + GFF2289 0.83 +1.8 998,054 + GFF2290 0.14 +0.3 998,055 - GFF2290 0.14 -0.8 998,055 - GFF2290 0.14 +1.0 998,104 + GFF2290 0.18 +1.0 998,105 - GFF2290 0.18 -0.2 998,105 - GFF2290 0.18 +0.4 998,279 - GFF2290 0.32 +0.1 998,458 + GFF2290 0.47 -3.0 998,458 + GFF2290 0.47 -0.0 998,458 + GFF2290 0.47 +0.3 998,656 + GFF2290 0.63 +1.4 998,656 + GFF2290 0.63 +0.2 998,824 + GFF2290 0.76 -0.2 998,887 + GFF2290 0.81 +0.1 998,888 - GFF2290 0.81 -0.3 999,068 - +0.1 999,184 + -0.7 999,185 - +0.3 999,186 + -1.5 999,187 - +1.2 999,193 + -1.6 999,330 + -1.9 999,330 + -0.5 999,331 - +0.7 999,331 - -0.5 999,331 - +0.6 999,331 - +0.8 999,331 - +0.7 999,331 - +0.2 999,331 - -0.6 999,444 - -1.7 999,511 + GFF2291 0.20 +2.0 999,511 + GFF2291 0.20 -0.5 999,512 - GFF2291 0.20 +1.7 999,512 - GFF2291 0.20 +0.6 999,512 - GFF2291 0.20 -0.6 999,526 + GFF2291 0.22 -1.1 999,527 - GFF2291 0.23 -1.3 999,562 + GFF2291 0.28 +0.3 999,563 - GFF2291 0.29 +0.2 999,563 - GFF2291 0.29 +0.3 999,563 - GFF2291 0.29 +0.4 999,710 - GFF2291 0.53 -0.1 999,794 - GFF2291 0.67 +0.4
Or see this region's nucleotide sequence