Strain Fitness in Xanthobacter sp. DMC5 around GFF2284

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2283 and GFF2284 are separated by 66 nucleotidesGFF2284 and GFF2285 are separated by 80 nucleotides GFF2283 - putative inner membrane transporter YedA, at 990,918 to 991,811 GFF2283 GFF2284 - Photosynthetic apparatus regulatory protein RegA, at 991,878 to 992,426 GFF2284 GFF2285 - Sensor histidine kinase RegB, at 992,507 to 993,847 GFF2285 Position (kb) 991 992 993Strain fitness (log2 ratio) -2 -1 0 1at 990.879 kb on - strandat 990.990 kb on + strandat 991.436 kb on - strand, within GFF2283at 991.624 kb on - strand, within GFF2283at 991.675 kb on - strand, within GFF2283at 991.675 kb on - strand, within GFF2283at 991.675 kb on - strand, within GFF2283at 992.504 kb on - strandat 992.504 kb on - strandat 992.509 kb on - strandat 992.737 kb on - strand, within GFF2285at 992.737 kb on - strand, within GFF2285at 992.737 kb on - strand, within GFF2285at 992.890 kb on - strand, within GFF2285at 993.112 kb on + strand, within GFF2285

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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990,879 - +0.1
990,990 + +1.5
991,436 - GFF2283 0.58 +0.8
991,624 - GFF2283 0.79 -0.5
991,675 - GFF2283 0.85 +0.3
991,675 - GFF2283 0.85 -1.9
991,675 - GFF2283 0.85 -0.5
992,504 - -1.5
992,504 - -0.3
992,509 - -0.0
992,737 - GFF2285 0.17 +0.7
992,737 - GFF2285 0.17 -1.3
992,737 - GFF2285 0.17 -0.6
992,890 - GFF2285 0.29 -0.4
993,112 + GFF2285 0.45 +1.4

Or see this region's nucleotide sequence