Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF227 and GFF228 are separated by 82 nucleotides GFF228 and GFF229 are separated by 166 nucleotides GFF229 and GFF230 overlap by 64 nucleotides
GFF227 - Sodium-potassium/proton antiporter ChaA, at 238,414 to 239,511
GFF227
GFF228 - hypothetical protein, at 239,594 to 240,004
GFF228
GFF229 - hypothetical protein, at 240,171 to 240,842
GFF229
GFF230 - Leucyl/phenylalanyl-tRNA--protein transferase, at 240,779 to 241,450
GFF230
Position (kb) 239
240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 238.837 kb on + strand, within GFF227 at 238.838 kb on - strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.938 kb on + strand, within GFF227 at 238.938 kb on + strand, within GFF227 at 238.939 kb on - strand, within GFF227 at 238.939 kb on - strand, within GFF227 at 238.963 kb on + strand, within GFF227 at 238.964 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 239.979 kb on - strand at 240.037 kb on - strand at 240.840 kb on + strand at 240.840 kb on + strand at 240.840 kb on + strand at 241.002 kb on - strand, within GFF230
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 238,837 + GFF227 0.39 -0.1 238,838 - GFF227 0.39 -0.1 238,936 + GFF227 0.48 -1.0 238,936 + GFF227 0.48 -0.1 238,936 + GFF227 0.48 +0.7 238,936 + GFF227 0.48 +0.2 238,936 + GFF227 0.48 +0.4 238,937 - GFF227 0.48 -0.0 238,937 - GFF227 0.48 +0.0 238,937 - GFF227 0.48 -0.5 238,937 - GFF227 0.48 -2.8 238,937 - GFF227 0.48 -0.7 238,937 - GFF227 0.48 +0.3 238,938 + GFF227 0.48 +0.2 238,938 + GFF227 0.48 -0.5 238,939 - GFF227 0.48 -0.1 238,939 - GFF227 0.48 -0.8 238,963 + GFF227 0.50 -0.3 238,964 - GFF227 0.50 +0.6 238,979 - GFF227 0.51 -0.3 238,979 - GFF227 0.51 -0.3 238,979 - GFF227 0.51 -0.2 238,979 - GFF227 0.51 +0.4 239,979 - -0.1 240,037 - -0.0 240,840 + -0.9 240,840 + -0.5 240,840 + -0.4 241,002 - GFF230 0.33 +0.6
Or see this region's nucleotide sequence