Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2264 and GFF2265 are separated by 445 nucleotides GFF2265 and GFF2266 are separated by 167 nucleotides GFF2266 and GFF2267 are separated by 237 nucleotides
GFF2264 - multidrug efflux RND transporter permease subunit OqxB12, at 971,102 to 974,311
GFF2264
GFF2265 - hypothetical protein, at 974,757 to 975,071
GFF2265
GFF2266 - 3-oxo-tetronate kinase, at 975,239 to 976,528
GFF2266
GFF2267 - Phosphoenolpyruvate carboxylase, at 976,766 to 979,546
GFF2267
Position (kb) 975
976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 974.310 kb on - strand at 974.310 kb on - strand at 974.422 kb on - strand at 974.490 kb on + strand at 974.491 kb on - strand at 974.532 kb on - strand at 974.564 kb on + strand at 974.678 kb on - strand at 974.897 kb on + strand, within GFF2265 at 974.897 kb on + strand, within GFF2265 at 974.898 kb on - strand, within GFF2265 at 974.898 kb on - strand, within GFF2265 at 975.117 kb on + strand at 975.118 kb on - strand at 975.118 kb on - strand at 975.118 kb on - strand at 975.223 kb on + strand at 975.756 kb on + strand, within GFF2266 at 975.757 kb on - strand, within GFF2266 at 976.147 kb on + strand, within GFF2266 at 976.148 kb on - strand, within GFF2266 at 976.148 kb on - strand, within GFF2266 at 976.148 kb on - strand, within GFF2266 at 976.149 kb on + strand, within GFF2266 at 976.149 kb on + strand, within GFF2266 at 976.149 kb on + strand, within GFF2266 at 976.150 kb on - strand, within GFF2266 at 976.150 kb on - strand, within GFF2266 at 976.150 kb on - strand, within GFF2266 at 976.150 kb on - strand, within GFF2266 at 976.150 kb on - strand, within GFF2266 at 976.241 kb on - strand, within GFF2266 at 976.492 kb on + strand at 976.493 kb on - strand at 976.495 kb on - strand at 976.585 kb on + strand at 976.586 kb on - strand at 976.598 kb on + strand at 976.900 kb on - strand at 976.998 kb on + strand at 977.172 kb on + strand, within GFF2267 at 977.173 kb on - strand, within GFF2267 at 977.291 kb on - strand, within GFF2267 at 977.373 kb on + strand, within GFF2267 at 977.373 kb on + strand, within GFF2267 at 977.373 kb on + strand, within GFF2267 at 977.374 kb on - strand, within GFF2267 at 977.374 kb on - strand, within GFF2267 at 977.398 kb on - strand, within GFF2267 at 977.460 kb on + strand, within GFF2267
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 974,310 - -0.3 974,310 - +0.2 974,422 - +0.1 974,490 + +0.2 974,491 - -0.6 974,532 - +0.1 974,564 + +0.8 974,678 - +0.7 974,897 + GFF2265 0.44 -0.9 974,897 + GFF2265 0.44 +0.4 974,898 - GFF2265 0.45 +1.0 974,898 - GFF2265 0.45 +0.9 975,117 + -0.4 975,118 - -1.2 975,118 - +0.4 975,118 - +0.3 975,223 + -1.4 975,756 + GFF2266 0.40 -2.3 975,757 - GFF2266 0.40 +0.2 976,147 + GFF2266 0.70 -1.2 976,148 - GFF2266 0.70 +0.9 976,148 - GFF2266 0.70 +1.0 976,148 - GFF2266 0.70 +0.6 976,149 + GFF2266 0.71 +0.3 976,149 + GFF2266 0.71 -1.0 976,149 + GFF2266 0.71 -3.7 976,150 - GFF2266 0.71 +0.4 976,150 - GFF2266 0.71 -0.9 976,150 - GFF2266 0.71 -0.3 976,150 - GFF2266 0.71 -0.0 976,150 - GFF2266 0.71 -1.1 976,241 - GFF2266 0.78 -0.1 976,492 + +1.4 976,493 - +0.1 976,495 - -0.5 976,585 + +0.2 976,586 - -0.5 976,598 + -0.2 976,900 - +0.0 976,998 + -1.2 977,172 + GFF2267 0.15 +0.4 977,173 - GFF2267 0.15 +0.2 977,291 - GFF2267 0.19 -1.1 977,373 + GFF2267 0.22 -1.1 977,373 + GFF2267 0.22 -1.1 977,373 + GFF2267 0.22 -1.7 977,374 - GFF2267 0.22 -1.9 977,374 - GFF2267 0.22 -2.3 977,398 - GFF2267 0.23 -2.0 977,460 + GFF2267 0.25 -0.6
Or see this region's nucleotide sequence