Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2258 and GFF2259 are separated by 106 nucleotides GFF2259 and GFF2260 are separated by 122 nucleotides GFF2260 and GFF2261 are separated by 9 nucleotides
GFF2257 - Cell division protein FtsQ, at 963,886 to 964,914
GFF2257
GFF2258 - D-alanine--D-alanine ligase B, at 964,881 to 965,801
GFF2258
GFF2259 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 965,908 to 966,867
GFF2259
GFF2260 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 966,990 to 967,652
GFF2260
GFF2261 - HTH-type transcriptional regulator DmlR, at 967,662 to 968,582
GFF2261
Position (kb) 965
966
967 Strain fitness (log2 ratio) -1
0
1
2 at 965.891 kb on + strand at 965.902 kb on - strand at 965.902 kb on - strand at 967.307 kb on + strand, within GFF2260 at 967.307 kb on + strand, within GFF2260 at 967.307 kb on + strand, within GFF2260 at 967.308 kb on - strand, within GFF2260 at 967.389 kb on + strand, within GFF2260 at 967.389 kb on + strand, within GFF2260 at 967.389 kb on + strand, within GFF2260 at 967.390 kb on - strand, within GFF2260 at 967.390 kb on - strand, within GFF2260 at 967.398 kb on + strand, within GFF2260 at 967.521 kb on + strand, within GFF2260 at 967.521 kb on + strand, within GFF2260 at 967.521 kb on + strand, within GFF2260 at 967.522 kb on - strand, within GFF2260 at 967.651 kb on - strand at 967.682 kb on + strand at 967.763 kb on - strand, within GFF2261
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 965,891 + +0.2 965,902 - -0.0 965,902 - -1.2 967,307 + GFF2260 0.48 -1.3 967,307 + GFF2260 0.48 +2.4 967,307 + GFF2260 0.48 +0.9 967,308 - GFF2260 0.48 -0.3 967,389 + GFF2260 0.60 +0.4 967,389 + GFF2260 0.60 +0.8 967,389 + GFF2260 0.60 -0.4 967,390 - GFF2260 0.60 -0.1 967,390 - GFF2260 0.60 -0.8 967,398 + GFF2260 0.62 -0.1 967,521 + GFF2260 0.80 +0.6 967,521 + GFF2260 0.80 +0.4 967,521 + GFF2260 0.80 +0.1 967,522 - GFF2260 0.80 +0.8 967,651 - -0.1 967,682 + +1.7 967,763 - GFF2261 0.11 -1.7
Or see this region's nucleotide sequence