Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2227 and GFF2228 are separated by 40 nucleotides GFF2228 and GFF2229 are separated by 64 nucleotides GFF2229 and GFF2230 are separated by 80 nucleotides
GFF2227 - hypothetical protein, at 931,698 to 932,288
GFF2227
GFF2228 - hypothetical protein, at 932,329 to 932,946
GFF2228
GFF2229 - hypothetical protein, at 933,011 to 933,655
GFF2229
GFF2230 - hypothetical protein, at 933,736 to 934,713
GFF2230
Position (kb) 933
934 Strain fitness (log2 ratio) -2
-1
0
1
2 at 932.298 kb on - strand at 932.298 kb on - strand at 932.298 kb on - strand at 933.734 kb on + strand at 933.976 kb on - strand, within GFF2230 at 933.976 kb on - strand, within GFF2230 at 933.986 kb on - strand, within GFF2230 at 933.986 kb on - strand, within GFF2230 at 934.099 kb on + strand, within GFF2230 at 934.432 kb on + strand, within GFF2230 at 934.432 kb on + strand, within GFF2230 at 934.433 kb on - strand, within GFF2230 at 934.591 kb on + strand, within GFF2230 at 934.591 kb on + strand, within GFF2230 at 934.592 kb on - strand, within GFF2230 at 934.592 kb on - strand, within GFF2230 at 934.592 kb on - strand, within GFF2230 at 934.592 kb on - strand, within GFF2230 at 934.594 kb on - strand, within GFF2230
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 932,298 - -0.9 932,298 - +0.2 932,298 - -0.7 933,734 + -0.9 933,976 - GFF2230 0.25 -0.5 933,976 - GFF2230 0.25 +2.1 933,986 - GFF2230 0.26 +0.2 933,986 - GFF2230 0.26 -0.1 934,099 + GFF2230 0.37 +0.1 934,432 + GFF2230 0.71 -1.8 934,432 + GFF2230 0.71 +0.5 934,433 - GFF2230 0.71 +0.4 934,591 + GFF2230 0.87 -0.3 934,591 + GFF2230 0.87 +0.3 934,592 - GFF2230 0.88 +0.2 934,592 - GFF2230 0.88 +0.7 934,592 - GFF2230 0.88 -0.4 934,592 - GFF2230 0.88 -0.0 934,594 - GFF2230 0.88 -0.6
Or see this region's nucleotide sequence