Strain Fitness in Xanthobacter sp. DMC5 around GFF2228

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2226 and GFF2227 overlap by 4 nucleotidesGFF2227 and GFF2228 are separated by 40 nucleotidesGFF2228 and GFF2229 are separated by 64 nucleotidesGFF2229 and GFF2230 are separated by 80 nucleotides GFF2226 - Orotidine 5'-phosphate decarboxylase, at 930,979 to 931,701 GFF2226 GFF2227 - hypothetical protein, at 931,698 to 932,288 GFF2227 GFF2228 - hypothetical protein, at 932,329 to 932,946 GFF2228 GFF2229 - hypothetical protein, at 933,011 to 933,655 GFF2229 GFF2230 - hypothetical protein, at 933,736 to 934,713 GFF2230 Position (kb) 932 933Strain fitness (log2 ratio) -1 0 1at 932.298 kb on - strandat 932.298 kb on - strandat 932.298 kb on - strandat 933.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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932,298 - -0.9
932,298 - +0.2
932,298 - -0.7
933,734 + -0.9

Or see this region's nucleotide sequence