Strain Fitness in Xanthobacter sp. DMC5 around GFF2227

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2225 and GFF2226 are separated by 13 nucleotidesGFF2226 and GFF2227 overlap by 4 nucleotidesGFF2227 and GFF2228 are separated by 40 nucleotidesGFF2228 and GFF2229 are separated by 64 nucleotides GFF2225 - hypothetical protein, at 930,321 to 930,965 GFF2225 GFF2226 - Orotidine 5'-phosphate decarboxylase, at 930,979 to 931,701 GFF2226 GFF2227 - hypothetical protein, at 931,698 to 932,288 GFF2227 GFF2228 - hypothetical protein, at 932,329 to 932,946 GFF2228 GFF2229 - hypothetical protein, at 933,011 to 933,655 GFF2229 Position (kb) 931 932 933Strain fitness (log2 ratio) -1 0 1at 930.761 kb on - strand, within GFF2225at 930.883 kb on + strand, within GFF2225at 930.905 kb on - strandat 930.905 kb on - strandat 930.913 kb on + strandat 930.953 kb on - strandat 932.298 kb on - strandat 932.298 kb on - strandat 932.298 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
930,761 - GFF2225 0.68 -0.6
930,883 + GFF2225 0.87 +1.4
930,905 - -0.4
930,905 - -0.7
930,913 + -0.2
930,953 - -0.5
932,298 - -0.9
932,298 - +0.2
932,298 - -0.7

Or see this region's nucleotide sequence