Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2222 and GFF2223 are separated by 52 nucleotides GFF2223 and GFF2224 are separated by 17 nucleotides GFF2224 and GFF2225 are separated by 27 nucleotides GFF2225 and GFF2226 are separated by 13 nucleotides
GFF2222 - Farnesyl diphosphate synthase, at 927,738 to 928,772
GFF2222
GFF2223 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 928,825 to 929,448
GFF2223
GFF2224 - 4-hydroxy-tetrahydrodipicolinate reductase, at 929,466 to 930,293
GFF2224
GFF2225 - hypothetical protein, at 930,321 to 930,965
GFF2225
GFF2226 - Orotidine 5'-phosphate decarboxylase, at 930,979 to 931,701
GFF2226
Position (kb) 929
930
931 Strain fitness (log2 ratio) -1
0
1 at 930.413 kb on - strand, within GFF2225 at 930.428 kb on - strand, within GFF2225 at 930.465 kb on - strand, within GFF2225 at 930.572 kb on - strand, within GFF2225 at 930.572 kb on - strand, within GFF2225 at 930.572 kb on - strand, within GFF2225 at 930.572 kb on - strand, within GFF2225 at 930.683 kb on - strand, within GFF2225 at 930.761 kb on - strand, within GFF2225 at 930.883 kb on + strand, within GFF2225 at 930.905 kb on - strand at 930.905 kb on - strand at 930.913 kb on + strand at 930.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 930,413 - GFF2225 0.14 -0.7 930,428 - GFF2225 0.17 +0.2 930,465 - GFF2225 0.22 +0.3 930,572 - GFF2225 0.39 -0.9 930,572 - GFF2225 0.39 +0.8 930,572 - GFF2225 0.39 +0.3 930,572 - GFF2225 0.39 +0.0 930,683 - GFF2225 0.56 -1.0 930,761 - GFF2225 0.68 -0.6 930,883 + GFF2225 0.87 +1.4 930,905 - -0.4 930,905 - -0.7 930,913 + -0.2 930,953 - -0.5
Or see this region's nucleotide sequence