Strain Fitness in Xanthobacter sp. DMC5 around GFF2223

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2222 and GFF2223 are separated by 52 nucleotidesGFF2223 and GFF2224 are separated by 17 nucleotidesGFF2224 and GFF2225 are separated by 27 nucleotides GFF2222 - Farnesyl diphosphate synthase, at 927,738 to 928,772 GFF2222 GFF2223 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 928,825 to 929,448 GFF2223 GFF2224 - 4-hydroxy-tetrahydrodipicolinate reductase, at 929,466 to 930,293 GFF2224 GFF2225 - hypothetical protein, at 930,321 to 930,965 GFF2225 Position (kb) 928 929 930Strain fitness (log2 ratio) -1 0 1at 927.835 kb on + strandat 928.101 kb on + strand, within GFF2222at 928.101 kb on + strand, within GFF2222at 928.102 kb on - strand, within GFF2222at 928.102 kb on - strand, within GFF2222at 928.179 kb on + strand, within GFF2222at 928.179 kb on + strand, within GFF2222at 930.413 kb on - strand, within GFF2225at 930.428 kb on - strand, within GFF2225

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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927,835 + -0.3
928,101 + GFF2222 0.35 +0.7
928,101 + GFF2222 0.35 +0.0
928,102 - GFF2222 0.35 -0.6
928,102 - GFF2222 0.35 -0.6
928,179 + GFF2222 0.43 +0.1
928,179 + GFF2222 0.43 -0.6
930,413 - GFF2225 0.14 -0.7
930,428 - GFF2225 0.17 +0.2

Or see this region's nucleotide sequence