Strain Fitness in Xanthobacter sp. DMC5 around GFF222

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF221 and GFF222 are separated by 493 nucleotidesGFF222 and GFF223 are separated by 163 nucleotidesGFF223 and GFF224 are separated by 10 nucleotides GFF221 - Cell cycle response regulator CtrA, at 231,681 to 232,382 GFF221 GFF222 - hypothetical protein, at 232,876 to 233,271 GFF222 GFF223 - hypothetical protein, at 233,435 to 233,974 GFF223 GFF224 - hypothetical protein, at 233,985 to 235,814 GFF224 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2 3at 232.855 kb on + strandat 232.859 kb on + strandat 232.860 kb on - strandat 232.860 kb on - strandat 233.387 kb on - strandat 233.510 kb on + strand, within GFF223at 233.598 kb on - strand, within GFF223at 233.624 kb on - strand, within GFF223at 233.856 kb on - strand, within GFF223at 233.871 kb on - strand, within GFF223at 233.888 kb on + strand, within GFF223at 233.889 kb on - strand, within GFF223at 234.060 kb on + strandat 234.060 kb on + strandat 234.061 kb on - strandat 234.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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232,855 + -2.0
232,859 + -0.7
232,860 - +3.3
232,860 - +1.8
233,387 - -0.5
233,510 + GFF223 0.14 -0.4
233,598 - GFF223 0.30 -0.5
233,624 - GFF223 0.35 -0.1
233,856 - GFF223 0.78 -0.2
233,871 - GFF223 0.81 +0.7
233,888 + GFF223 0.84 -0.2
233,889 - GFF223 0.84 -1.1
234,060 + +0.6
234,060 + -0.5
234,061 - +1.7
234,061 - -0.6

Or see this region's nucleotide sequence