Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2211 and GFF2212 are separated by 10 nucleotides GFF2212 and GFF2213 are separated by 665 nucleotides GFF2213 and GFF2214 are separated by 173 nucleotides GFF2214 and GFF2215 are separated by 25 nucleotides
GFF2211 - hypothetical protein, at 915,329 to 915,697
GFF2211
GFF2212 - hypothetical protein, at 915,708 to 915,950
GFF2212
GFF2213 - Pyruvate dehydrogenase E1 component, at 916,616 to 919,054
GFF2213
GFF2214 - Leucine-responsive regulatory protein, at 919,228 to 919,689
GFF2214
GFF2215 - hypothetical protein, at 919,715 to 920,524
GFF2215
Position (kb) 916
917
918
919
920 Strain fitness (log2 ratio) -2
-1
0
1
2 at 915.683 kb on - strand at 915.694 kb on - strand at 915.698 kb on - strand at 915.745 kb on + strand, within GFF2212 at 916.032 kb on - strand at 916.032 kb on - strand at 916.042 kb on + strand at 916.114 kb on - strand at 916.122 kb on + strand at 916.303 kb on + strand at 916.655 kb on + strand at 916.656 kb on - strand at 916.699 kb on - strand at 916.708 kb on - strand at 917.040 kb on - strand, within GFF2213 at 917.076 kb on + strand, within GFF2213 at 917.076 kb on + strand, within GFF2213 at 917.076 kb on + strand, within GFF2213 at 917.233 kb on - strand, within GFF2213 at 917.418 kb on + strand, within GFF2213 at 917.418 kb on + strand, within GFF2213 at 917.419 kb on - strand, within GFF2213 at 917.419 kb on - strand, within GFF2213 at 917.419 kb on - strand, within GFF2213 at 917.419 kb on - strand, within GFF2213 at 917.419 kb on - strand, within GFF2213 at 917.457 kb on + strand, within GFF2213 at 917.457 kb on + strand, within GFF2213 at 917.457 kb on + strand, within GFF2213 at 917.841 kb on + strand, within GFF2213 at 917.842 kb on - strand, within GFF2213 at 917.842 kb on - strand, within GFF2213 at 918.051 kb on + strand, within GFF2213 at 918.051 kb on + strand, within GFF2213 at 918.051 kb on + strand, within GFF2213 at 918.052 kb on - strand, within GFF2213 at 918.345 kb on + strand, within GFF2213 at 918.402 kb on + strand, within GFF2213 at 918.403 kb on - strand, within GFF2213 at 918.403 kb on - strand, within GFF2213 at 918.445 kb on - strand, within GFF2213 at 918.594 kb on + strand, within GFF2213 at 918.594 kb on + strand, within GFF2213 at 918.594 kb on + strand, within GFF2213 at 918.594 kb on + strand, within GFF2213 at 918.595 kb on - strand, within GFF2213 at 918.595 kb on - strand, within GFF2213 at 918.693 kb on + strand, within GFF2213 at 918.694 kb on - strand, within GFF2213 at 919.132 kb on + strand at 919.171 kb on - strand at 919.301 kb on + strand, within GFF2214 at 919.490 kb on + strand, within GFF2214 at 919.490 kb on + strand, within GFF2214 at 919.491 kb on - strand, within GFF2214 at 919.519 kb on + strand, within GFF2214 at 919.520 kb on - strand, within GFF2214 at 919.520 kb on - strand, within GFF2214 at 919.544 kb on - strand, within GFF2214 at 919.579 kb on + strand, within GFF2214 at 919.580 kb on - strand, within GFF2214 at 919.580 kb on - strand, within GFF2214 at 919.664 kb on - strand at 919.722 kb on + strand at 919.722 kb on + strand at 919.853 kb on + strand, within GFF2215 at 919.853 kb on + strand, within GFF2215 at 919.937 kb on + strand, within GFF2215 at 919.937 kb on + strand, within GFF2215 at 919.937 kb on + strand, within GFF2215
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 915,683 - +0.1 915,694 - -0.5 915,698 - -0.7 915,745 + GFF2212 0.15 -0.2 916,032 - -0.6 916,032 - +0.0 916,042 + -0.3 916,114 - +0.7 916,122 + -0.1 916,303 + +0.1 916,655 + +0.1 916,656 - +0.1 916,699 - -0.2 916,708 - -0.9 917,040 - GFF2213 0.17 +0.6 917,076 + GFF2213 0.19 +0.1 917,076 + GFF2213 0.19 +0.5 917,076 + GFF2213 0.19 -0.4 917,233 - GFF2213 0.25 -0.2 917,418 + GFF2213 0.33 -0.9 917,418 + GFF2213 0.33 -0.3 917,419 - GFF2213 0.33 -1.3 917,419 - GFF2213 0.33 -0.3 917,419 - GFF2213 0.33 -0.2 917,419 - GFF2213 0.33 +0.3 917,419 - GFF2213 0.33 -1.0 917,457 + GFF2213 0.34 +1.7 917,457 + GFF2213 0.34 +0.1 917,457 + GFF2213 0.34 +1.8 917,841 + GFF2213 0.50 -1.3 917,842 - GFF2213 0.50 -0.4 917,842 - GFF2213 0.50 +0.1 918,051 + GFF2213 0.59 -1.0 918,051 + GFF2213 0.59 -0.1 918,051 + GFF2213 0.59 +0.1 918,052 - GFF2213 0.59 -0.0 918,345 + GFF2213 0.71 +0.1 918,402 + GFF2213 0.73 +1.1 918,403 - GFF2213 0.73 +0.8 918,403 - GFF2213 0.73 -0.0 918,445 - GFF2213 0.75 -0.9 918,594 + GFF2213 0.81 +0.2 918,594 + GFF2213 0.81 +0.8 918,594 + GFF2213 0.81 -0.3 918,594 + GFF2213 0.81 -1.0 918,595 - GFF2213 0.81 -0.3 918,595 - GFF2213 0.81 +1.0 918,693 + GFF2213 0.85 -0.9 918,694 - GFF2213 0.85 -2.1 919,132 + +0.7 919,171 - -0.1 919,301 + GFF2214 0.16 +0.1 919,490 + GFF2214 0.57 -0.5 919,490 + GFF2214 0.57 +0.2 919,491 - GFF2214 0.57 +1.1 919,519 + GFF2214 0.63 -0.2 919,520 - GFF2214 0.63 +0.4 919,520 - GFF2214 0.63 +0.3 919,544 - GFF2214 0.68 -0.3 919,579 + GFF2214 0.76 +0.3 919,580 - GFF2214 0.76 -0.9 919,580 - GFF2214 0.76 +0.9 919,664 - -0.6 919,722 + +0.1 919,722 + +0.1 919,853 + GFF2215 0.17 +1.7 919,853 + GFF2215 0.17 -0.8 919,937 + GFF2215 0.27 +0.7 919,937 + GFF2215 0.27 -2.4 919,937 + GFF2215 0.27 -0.3
Or see this region's nucleotide sequence