Strain Fitness in Xanthobacter sp. DMC5 around GFF2210

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2208 and GFF2209 are separated by 67 nucleotidesGFF2209 and GFF2210 overlap by 1 nucleotidesGFF2210 and GFF2211 are separated by 495 nucleotidesGFF2211 and GFF2212 are separated by 10 nucleotides GFF2208 - hypothetical protein, at 911,390 to 911,617 GFF2208 GFF2209 - hypothetical protein, at 911,685 to 912,266 GFF2209 GFF2210 - hypothetical protein, at 912,266 to 914,833 GFF2210 GFF2211 - hypothetical protein, at 915,329 to 915,697 GFF2211 GFF2212 - hypothetical protein, at 915,708 to 915,950 GFF2212 Position (kb) 912 913 914 915Strain fitness (log2 ratio) -2 -1 0 1 2at 911.354 kb on + strandat 911.354 kb on + strandat 911.390 kb on - strandat 911.390 kb on - strandat 911.390 kb on - strandat 911.469 kb on + strand, within GFF2208at 911.469 kb on + strand, within GFF2208at 911.469 kb on + strand, within GFF2208at 911.694 kb on - strandat 912.007 kb on + strand, within GFF2209at 912.030 kb on + strand, within GFF2209at 912.031 kb on - strand, within GFF2209at 912.031 kb on - strand, within GFF2209at 912.148 kb on + strand, within GFF2209at 912.148 kb on + strand, within GFF2209at 912.148 kb on + strand, within GFF2209at 912.149 kb on - strand, within GFF2209at 912.149 kb on - strand, within GFF2209at 912.474 kb on + strandat 912.474 kb on + strandat 912.474 kb on + strandat 912.474 kb on + strandat 912.475 kb on - strandat 912.475 kb on - strandat 912.475 kb on - strandat 912.475 kb on - strandat 912.475 kb on - strandat 912.526 kb on + strand, within GFF2210at 912.526 kb on + strand, within GFF2210at 912.526 kb on + strand, within GFF2210at 912.527 kb on - strand, within GFF2210at 912.547 kb on - strand, within GFF2210at 912.580 kb on + strand, within GFF2210at 912.580 kb on + strand, within GFF2210at 912.580 kb on + strand, within GFF2210at 912.581 kb on - strand, within GFF2210at 912.581 kb on - strand, within GFF2210at 912.589 kb on + strand, within GFF2210at 912.590 kb on - strand, within GFF2210at 912.614 kb on + strand, within GFF2210at 912.614 kb on + strand, within GFF2210at 912.615 kb on - strand, within GFF2210at 912.615 kb on - strand, within GFF2210at 912.690 kb on - strand, within GFF2210at 912.710 kb on + strand, within GFF2210at 912.710 kb on + strand, within GFF2210at 912.749 kb on + strand, within GFF2210at 912.749 kb on + strand, within GFF2210at 912.749 kb on + strand, within GFF2210at 912.749 kb on + strand, within GFF2210at 912.749 kb on + strand, within GFF2210at 912.750 kb on - strand, within GFF2210at 912.750 kb on - strand, within GFF2210at 912.750 kb on - strand, within GFF2210at 912.750 kb on - strand, within GFF2210at 912.847 kb on - strand, within GFF2210at 912.847 kb on - strand, within GFF2210at 912.847 kb on - strand, within GFF2210at 912.847 kb on - strand, within GFF2210at 912.861 kb on + strand, within GFF2210at 912.862 kb on - strand, within GFF2210at 912.868 kb on + strand, within GFF2210at 912.868 kb on + strand, within GFF2210at 912.868 kb on + strand, within GFF2210at 912.869 kb on - strand, within GFF2210at 912.918 kb on + strand, within GFF2210at 912.918 kb on + strand, within GFF2210at 912.918 kb on + strand, within GFF2210at 912.918 kb on + strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 912.919 kb on - strand, within GFF2210at 913.024 kb on + strand, within GFF2210at 913.024 kb on + strand, within GFF2210at 913.024 kb on + strand, within GFF2210at 913.025 kb on - strand, within GFF2210at 913.125 kb on + strand, within GFF2210at 913.126 kb on - strand, within GFF2210at 913.359 kb on + strand, within GFF2210at 913.468 kb on + strand, within GFF2210at 913.468 kb on + strand, within GFF2210at 913.469 kb on - strand, within GFF2210at 913.670 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.691 kb on + strand, within GFF2210at 913.692 kb on - strand, within GFF2210at 913.692 kb on - strand, within GFF2210at 914.068 kb on - strand, within GFF2210at 914.068 kb on - strand, within GFF2210at 914.068 kb on - strand, within GFF2210at 914.254 kb on + strand, within GFF2210at 914.254 kb on + strand, within GFF2210at 914.254 kb on + strand, within GFF2210at 914.254 kb on + strand, within GFF2210at 914.254 kb on + strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.255 kb on - strand, within GFF2210at 914.365 kb on + strand, within GFF2210at 914.365 kb on + strand, within GFF2210at 914.365 kb on + strand, within GFF2210at 914.537 kb on + strand, within GFF2210at 914.538 kb on - strand, within GFF2210at 914.538 kb on - strand, within GFF2210at 914.666 kb on + strandat 914.666 kb on + strandat 914.728 kb on - strandat 914.752 kb on - strandat 914.752 kb on - strandat 914.796 kb on + strandat 914.797 kb on - strandat 914.873 kb on + strandat 914.873 kb on + strandat 914.874 kb on - strandat 914.874 kb on - strandat 914.934 kb on + strandat 915.068 kb on + strandat 915.075 kb on - strandat 915.148 kb on - strandat 915.293 kb on + strandat 915.293 kb on + strandat 915.293 kb on + strandat 915.294 kb on - strandat 915.294 kb on - strandat 915.346 kb on - strandat 915.346 kb on - strandat 915.359 kb on + strandat 915.359 kb on + strandat 915.359 kb on + strandat 915.360 kb on - strandat 915.360 kb on - strandat 915.683 kb on - strandat 915.694 kb on - strandat 915.698 kb on - strandat 915.745 kb on + strand, within GFF2212

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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911,354 + -1.3
911,354 + -0.9
911,390 - -0.5
911,390 - +0.7
911,390 - +0.2
911,469 + GFF2208 0.35 -0.9
911,469 + GFF2208 0.35 +0.6
911,469 + GFF2208 0.35 -0.2
911,694 - +0.4
912,007 + GFF2209 0.55 -0.4
912,030 + GFF2209 0.59 -0.8
912,031 - GFF2209 0.59 +0.1
912,031 - GFF2209 0.59 +0.3
912,148 + GFF2209 0.80 -1.4
912,148 + GFF2209 0.80 +0.9
912,148 + GFF2209 0.80 -0.8
912,149 - GFF2209 0.80 -1.4
912,149 - GFF2209 0.80 -0.4
912,474 + +0.3
912,474 + +1.0
912,474 + +1.1
912,474 + +0.6
912,475 - -1.8
912,475 - +0.5
912,475 - +0.8
912,475 - -0.8
912,475 - -1.2
912,526 + GFF2210 0.10 -0.3
912,526 + GFF2210 0.10 +0.2
912,526 + GFF2210 0.10 -1.2
912,527 - GFF2210 0.10 -0.0
912,547 - GFF2210 0.11 -0.4
912,580 + GFF2210 0.12 +0.3
912,580 + GFF2210 0.12 +0.1
912,580 + GFF2210 0.12 -0.6
912,581 - GFF2210 0.12 -0.0
912,581 - GFF2210 0.12 -0.6
912,589 + GFF2210 0.13 +0.9
912,590 - GFF2210 0.13 +0.1
912,614 + GFF2210 0.14 +0.7
912,614 + GFF2210 0.14 +0.5
912,615 - GFF2210 0.14 -1.0
912,615 - GFF2210 0.14 +0.0
912,690 - GFF2210 0.17 +0.1
912,710 + GFF2210 0.17 -0.2
912,710 + GFF2210 0.17 -1.1
912,749 + GFF2210 0.19 -0.1
912,749 + GFF2210 0.19 -1.0
912,749 + GFF2210 0.19 -1.1
912,749 + GFF2210 0.19 +0.3
912,749 + GFF2210 0.19 +0.1
912,750 - GFF2210 0.19 +0.7
912,750 - GFF2210 0.19 -0.3
912,750 - GFF2210 0.19 +1.4
912,750 - GFF2210 0.19 -0.1
912,847 - GFF2210 0.23 -0.3
912,847 - GFF2210 0.23 -1.6
912,847 - GFF2210 0.23 +0.5
912,847 - GFF2210 0.23 +0.2
912,861 + GFF2210 0.23 +0.5
912,862 - GFF2210 0.23 +1.6
912,868 + GFF2210 0.23 -0.4
912,868 + GFF2210 0.23 -0.3
912,868 + GFF2210 0.23 +0.6
912,869 - GFF2210 0.23 +0.1
912,918 + GFF2210 0.25 -0.3
912,918 + GFF2210 0.25 -1.2
912,918 + GFF2210 0.25 +0.5
912,918 + GFF2210 0.25 -0.6
912,919 - GFF2210 0.25 -0.8
912,919 - GFF2210 0.25 -0.2
912,919 - GFF2210 0.25 -0.8
912,919 - GFF2210 0.25 -0.4
912,919 - GFF2210 0.25 -1.7
912,919 - GFF2210 0.25 +0.3
913,024 + GFF2210 0.30 -0.6
913,024 + GFF2210 0.30 -2.4
913,024 + GFF2210 0.30 +0.4
913,025 - GFF2210 0.30 -0.1
913,125 + GFF2210 0.33 -0.5
913,126 - GFF2210 0.33 -0.1
913,359 + GFF2210 0.43 -0.4
913,468 + GFF2210 0.47 +0.4
913,468 + GFF2210 0.47 +0.1
913,469 - GFF2210 0.47 +0.2
913,670 + GFF2210 0.55 -0.0
913,691 + GFF2210 0.55 +0.2
913,691 + GFF2210 0.55 -1.8
913,691 + GFF2210 0.55 +0.3
913,691 + GFF2210 0.55 -0.6
913,691 + GFF2210 0.55 -0.8
913,691 + GFF2210 0.55 -1.0
913,691 + GFF2210 0.55 +0.4
913,692 - GFF2210 0.56 -2.4
913,692 - GFF2210 0.56 +0.2
914,068 - GFF2210 0.70 +0.2
914,068 - GFF2210 0.70 -0.6
914,068 - GFF2210 0.70 +0.6
914,254 + GFF2210 0.77 -0.9
914,254 + GFF2210 0.77 -0.9
914,254 + GFF2210 0.77 -1.0
914,254 + GFF2210 0.77 +0.3
914,254 + GFF2210 0.77 +2.4
914,255 - GFF2210 0.77 -0.2
914,255 - GFF2210 0.77 -0.5
914,255 - GFF2210 0.77 -1.6
914,255 - GFF2210 0.77 +0.2
914,255 - GFF2210 0.77 +0.0
914,255 - GFF2210 0.77 -0.0
914,255 - GFF2210 0.77 -1.9
914,255 - GFF2210 0.77 -0.4
914,255 - GFF2210 0.77 -0.1
914,255 - GFF2210 0.77 +0.6
914,365 + GFF2210 0.82 +0.7
914,365 + GFF2210 0.82 +1.9
914,365 + GFF2210 0.82 +0.0
914,537 + GFF2210 0.88 +1.0
914,538 - GFF2210 0.88 +0.8
914,538 - GFF2210 0.88 -0.0
914,666 + +0.5
914,666 + -0.6
914,728 - +0.7
914,752 - +1.3
914,752 - +1.5
914,796 + -0.1
914,797 - +0.1
914,873 + +0.4
914,873 + -0.4
914,874 - -0.4
914,874 - +1.2
914,934 + -1.0
915,068 + +0.2
915,075 - +0.6
915,148 - +0.2
915,293 + -0.1
915,293 + +0.1
915,293 + -0.8
915,294 - -0.8
915,294 - +0.6
915,346 - -0.4
915,346 - -1.0
915,359 + -1.8
915,359 + -1.0
915,359 + +0.2
915,360 - -0.2
915,360 - +0.9
915,683 - +0.1
915,694 - -0.5
915,698 - -0.7
915,745 + GFF2212 0.15 -0.2

Or see this region's nucleotide sequence