Strain Fitness in Xanthobacter sp. DMC5 around GFF221

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF220 and GFF221 are separated by 94 nucleotidesGFF221 and GFF222 are separated by 493 nucleotides GFF220 - hypothetical protein, at 231,125 to 231,586 GFF220 GFF221 - Cell cycle response regulator CtrA, at 231,681 to 232,382 GFF221 GFF222 - hypothetical protein, at 232,876 to 233,271 GFF222 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2 3at 230.812 kb on - strandat 231.105 kb on + strandat 231.106 kb on - strandat 231.106 kb on - strandat 231.106 kb on - strandat 231.536 kb on - strand, within GFF220at 232.855 kb on + strandat 232.859 kb on + strandat 232.860 kb on - strandat 232.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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230,812 - -0.5
231,105 + +0.0
231,106 - -1.1
231,106 - -0.6
231,106 - -0.4
231,536 - GFF220 0.89 +0.2
232,855 + -2.0
232,859 + -0.7
232,860 - +3.3
232,860 - +1.8

Or see this region's nucleotide sequence