Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2201 and GFF2202 are separated by 931 nucleotides GFF2202 and GFF2203 are separated by 192 nucleotides GFF2203 and GFF2204 are separated by 56 nucleotides
GFF2201 - hypothetical protein, at 902,107 to 902,847
GFF2201
GFF2202 - hypothetical protein, at 903,779 to 905,614
GFF2202
GFF2203 - hypothetical protein, at 905,807 to 906,220
GFF2203
GFF2204 - hypothetical protein, at 906,277 to 907,821
GFF2204
Position (kb) 903
904
905
906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 902.859 kb on - strand at 902.860 kb on + strand at 902.860 kb on + strand at 902.860 kb on + strand at 902.861 kb on - strand at 902.861 kb on - strand at 902.861 kb on - strand at 902.861 kb on - strand at 902.861 kb on - strand at 902.979 kb on + strand at 903.001 kb on - strand at 903.001 kb on - strand at 903.001 kb on - strand at 903.044 kb on + strand at 903.083 kb on - strand at 903.086 kb on - strand at 903.168 kb on - strand at 903.169 kb on + strand at 903.169 kb on + strand at 903.169 kb on + strand at 903.169 kb on + strand at 903.170 kb on - strand at 903.192 kb on - strand at 903.192 kb on - strand at 903.232 kb on + strand at 903.232 kb on + strand at 903.233 kb on - strand at 903.233 kb on - strand at 903.242 kb on + strand at 903.371 kb on - strand at 903.371 kb on - strand at 903.464 kb on + strand at 903.465 kb on - strand at 903.465 kb on - strand at 903.622 kb on - strand at 903.622 kb on - strand at 903.622 kb on - strand at 903.708 kb on - strand at 903.764 kb on + strand at 903.764 kb on + strand at 903.765 kb on - strand at 903.765 kb on - strand at 903.765 kb on - strand at 903.773 kb on - strand at 903.773 kb on - strand at 903.778 kb on + strand at 903.779 kb on - strand at 903.779 kb on - strand at 905.612 kb on + strand at 905.613 kb on - strand at 905.662 kb on + strand at 905.662 kb on + strand at 905.662 kb on + strand at 905.662 kb on + strand at 905.663 kb on - strand at 905.663 kb on - strand at 905.665 kb on + strand at 905.666 kb on - strand at 905.666 kb on - strand at 905.691 kb on - strand at 905.837 kb on + strand at 905.837 kb on + strand at 905.837 kb on + strand at 905.838 kb on - strand at 905.838 kb on - strand at 905.990 kb on + strand, within GFF2203 at 905.990 kb on + strand, within GFF2203 at 906.214 kb on + strand at 906.215 kb on - strand at 906.218 kb on + strand at 906.218 kb on + strand at 906.218 kb on + strand at 906.219 kb on - strand at 906.290 kb on + strand at 906.290 kb on + strand at 906.291 kb on - strand at 906.291 kb on - strand at 906.291 kb on - strand at 906.291 kb on - strand at 906.291 kb on - strand at 906.476 kb on + strand, within GFF2204 at 906.477 kb on - strand, within GFF2204 at 906.477 kb on - strand, within GFF2204 at 906.560 kb on + strand, within GFF2204 at 906.560 kb on + strand, within GFF2204 at 906.561 kb on - strand, within GFF2204 at 906.561 kb on - strand, within GFF2204 at 906.561 kb on - strand, within GFF2204 at 906.604 kb on + strand, within GFF2204 at 906.604 kb on + strand, within GFF2204 at 906.604 kb on + strand, within GFF2204 at 906.605 kb on - strand, within GFF2204 at 906.605 kb on - strand, within GFF2204
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 902,859 - -1.0 902,860 + +0.4 902,860 + -1.0 902,860 + -0.4 902,861 - +0.2 902,861 - +1.3 902,861 - -0.3 902,861 - -0.6 902,861 - -0.8 902,979 + +1.2 903,001 - +1.7 903,001 - +0.6 903,001 - -0.0 903,044 + -0.2 903,083 - +0.5 903,086 - +0.2 903,168 - +0.3 903,169 + +0.5 903,169 + +0.3 903,169 + -1.4 903,169 + +1.3 903,170 - +0.1 903,192 - -1.2 903,192 - +0.1 903,232 + -0.5 903,232 + +0.3 903,233 - -0.5 903,233 - +0.3 903,242 + +0.5 903,371 - -0.1 903,371 - +0.9 903,464 + +0.3 903,465 - -0.2 903,465 - -0.5 903,622 - -0.9 903,622 - +0.3 903,622 - +0.1 903,708 - -1.5 903,764 + -0.8 903,764 + -2.2 903,765 - -0.0 903,765 - +0.2 903,765 - +0.6 903,773 - +1.0 903,773 - -1.8 903,778 + -0.7 903,779 - -0.9 903,779 - -0.1 905,612 + +0.8 905,613 - -0.4 905,662 + -0.3 905,662 + +0.1 905,662 + -0.1 905,662 + +0.3 905,663 - -0.3 905,663 - -0.4 905,665 + +0.4 905,666 - -0.1 905,666 - -0.6 905,691 - +0.5 905,837 + -0.0 905,837 + -1.1 905,837 + -2.2 905,838 - -0.5 905,838 - +0.7 905,990 + GFF2203 0.44 +0.1 905,990 + GFF2203 0.44 -0.2 906,214 + +0.1 906,215 - -0.0 906,218 + +0.3 906,218 + +0.4 906,218 + -1.8 906,219 - -0.4 906,290 + +0.3 906,290 + -1.5 906,291 - +0.3 906,291 - -0.0 906,291 - -0.9 906,291 - -1.4 906,291 - +0.5 906,476 + GFF2204 0.13 -1.8 906,477 - GFF2204 0.13 -0.9 906,477 - GFF2204 0.13 -0.2 906,560 + GFF2204 0.18 +0.4 906,560 + GFF2204 0.18 +0.1 906,561 - GFF2204 0.18 +1.4 906,561 - GFF2204 0.18 -0.2 906,561 - GFF2204 0.18 -3.0 906,604 + GFF2204 0.21 -0.1 906,604 + GFF2204 0.21 +1.8 906,604 + GFF2204 0.21 -1.5 906,605 - GFF2204 0.21 -0.1 906,605 - GFF2204 0.21 +0.1
Or see this region's nucleotide sequence