Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2194 and GFF2195 are separated by 135 nucleotides GFF2195 and GFF2196 are separated by 314 nucleotides GFF2196 and GFF2197 are separated by 578 nucleotides
GFF2194 - Prophage integrase IntA, at 892,458 to 893,714
GFF2194
GFF2195 - hypothetical protein, at 893,850 to 894,074
GFF2195
GFF2196 - hypothetical protein, at 894,389 to 894,682
GFF2196
GFF2197 - hypothetical protein, at 895,261 to 896,253
GFF2197
Position (kb) 894
895 Strain fitness (log2 ratio) -2
-1
0
1 at 893.688 kb on - strand at 893.773 kb on - strand at 894.002 kb on + strand, within GFF2195 at 894.166 kb on + strand at 894.166 kb on + strand at 894.167 kb on - strand at 894.167 kb on - strand at 894.167 kb on - strand at 894.232 kb on + strand at 894.232 kb on + strand at 894.232 kb on + strand at 894.233 kb on - strand at 894.233 kb on - strand at 894.233 kb on - strand at 894.233 kb on - strand at 894.233 kb on - strand at 894.364 kb on - strand at 894.602 kb on - strand, within GFF2196 at 894.736 kb on + strand at 894.736 kb on + strand at 894.737 kb on - strand at 894.737 kb on - strand at 894.788 kb on + strand at 894.788 kb on + strand at 894.816 kb on - strand at 894.816 kb on - strand at 894.895 kb on + strand at 894.933 kb on - strand at 894.998 kb on + strand at 894.999 kb on - strand at 895.032 kb on - strand at 895.035 kb on + strand at 895.035 kb on + strand at 895.035 kb on + strand at 895.035 kb on + strand at 895.035 kb on + strand at 895.036 kb on - strand at 895.036 kb on - strand at 895.036 kb on - strand at 895.036 kb on - strand at 895.185 kb on + strand at 895.186 kb on - strand at 895.274 kb on + strand at 895.274 kb on + strand at 895.274 kb on + strand at 895.275 kb on - strand at 895.275 kb on - strand at 895.326 kb on - strand at 895.400 kb on + strand, within GFF2197 at 895.400 kb on + strand, within GFF2197 at 895.400 kb on + strand, within GFF2197 at 895.400 kb on + strand, within GFF2197 at 895.401 kb on - strand, within GFF2197 at 895.401 kb on - strand, within GFF2197 at 895.401 kb on - strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.436 kb on + strand, within GFF2197 at 895.437 kb on - strand, within GFF2197 at 895.437 kb on - strand, within GFF2197 at 895.437 kb on - strand, within GFF2197 at 895.437 kb on - strand, within GFF2197 at 895.437 kb on - strand, within GFF2197 at 895.437 kb on - strand, within GFF2197 at 895.515 kb on - strand, within GFF2197 at 895.617 kb on - strand, within GFF2197 at 895.617 kb on - strand, within GFF2197
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 893,688 - -0.1 893,773 - -0.1 894,002 + GFF2195 0.68 -0.4 894,166 + +0.7 894,166 + +0.2 894,167 - -0.3 894,167 - +0.3 894,167 - +0.4 894,232 + -0.0 894,232 + -0.6 894,232 + -0.6 894,233 - +0.7 894,233 - +0.4 894,233 - -0.1 894,233 - +0.2 894,233 - +0.0 894,364 - -0.9 894,602 - GFF2196 0.72 +0.1 894,736 + +0.2 894,736 + +1.1 894,737 - +0.1 894,737 - -1.3 894,788 + +0.1 894,788 + +0.7 894,816 - +0.1 894,816 - -0.4 894,895 + -0.2 894,933 - +0.7 894,998 + -0.5 894,999 - +0.2 895,032 - -0.8 895,035 + -1.5 895,035 + +0.4 895,035 + +1.0 895,035 + +0.4 895,035 + +0.0 895,036 - +0.5 895,036 - +1.1 895,036 - -1.6 895,036 - -0.7 895,185 + -1.4 895,186 - +1.7 895,274 + -1.0 895,274 + -1.5 895,274 + +0.6 895,275 - +0.4 895,275 - +0.2 895,326 - +0.3 895,400 + GFF2197 0.14 +1.2 895,400 + GFF2197 0.14 +0.0 895,400 + GFF2197 0.14 -0.4 895,400 + GFF2197 0.14 +0.1 895,401 - GFF2197 0.14 -0.5 895,401 - GFF2197 0.14 +0.8 895,401 - GFF2197 0.14 +1.2 895,436 + GFF2197 0.18 +0.1 895,436 + GFF2197 0.18 -0.2 895,436 + GFF2197 0.18 +0.6 895,436 + GFF2197 0.18 -0.8 895,436 + GFF2197 0.18 +0.3 895,436 + GFF2197 0.18 +0.5 895,436 + GFF2197 0.18 +0.7 895,436 + GFF2197 0.18 -0.6 895,436 + GFF2197 0.18 +1.6 895,436 + GFF2197 0.18 -1.0 895,436 + GFF2197 0.18 -0.5 895,436 + GFF2197 0.18 -0.9 895,436 + GFF2197 0.18 -1.8 895,436 + GFF2197 0.18 -0.6 895,437 - GFF2197 0.18 -1.3 895,437 - GFF2197 0.18 +0.7 895,437 - GFF2197 0.18 -1.2 895,437 - GFF2197 0.18 +0.5 895,437 - GFF2197 0.18 -0.5 895,437 - GFF2197 0.18 -0.8 895,515 - GFF2197 0.26 -0.5 895,617 - GFF2197 0.36 +0.5 895,617 - GFF2197 0.36 -0.9
Or see this region's nucleotide sequence