Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2179 and GFF2180 overlap by 4 nucleotides GFF2180 and GFF2181 are separated by 288 nucleotides GFF2181 and GFF2182 are separated by 533 nucleotides GFF2182 and GFF2183 are separated by 100 nucleotides GFF2183 and GFF2184 overlap by 1 nucleotides
GFF2179 - Phthiocerol synthesis polyketide synthase type I PpsC, at 878,545 to 879,531
GFF2179
GFF2180 - hypothetical protein, at 879,528 to 880,076
GFF2180
GFF2181 - HTH-type transcriptional regulator DmlR, at 880,365 to 881,282
GFF2181
GFF2182 - hypothetical protein, at 881,816 to 882,013
GFF2182
GFF2183 - hypothetical protein, at 882,114 to 882,266
GFF2183
GFF2184 - hypothetical protein, at 882,266 to 883,420
GFF2184
Position (kb) 880
881
882 Strain fitness (log2 ratio) -2
-1
0
1 at 879.365 kb on + strand, within GFF2179 at 879.381 kb on - strand, within GFF2179 at 879.383 kb on + strand, within GFF2179 at 879.383 kb on + strand, within GFF2179 at 879.383 kb on + strand, within GFF2179 at 879.384 kb on - strand, within GFF2179 at 879.677 kb on - strand, within GFF2180 at 879.712 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.821 kb on - strand, within GFF2180 at 879.847 kb on + strand, within GFF2180 at 879.847 kb on + strand, within GFF2180 at 879.848 kb on - strand, within GFF2180 at 879.848 kb on - strand, within GFF2180 at 879.961 kb on + strand, within GFF2180 at 880.094 kb on - strand at 880.094 kb on - strand at 880.147 kb on - strand at 880.184 kb on + strand at 880.211 kb on + strand at 880.212 kb on - strand at 880.212 kb on - strand at 880.212 kb on - strand at 880.298 kb on + strand at 880.299 kb on - strand at 880.686 kb on + strand, within GFF2181 at 880.686 kb on + strand, within GFF2181 at 880.687 kb on - strand, within GFF2181 at 880.687 kb on - strand, within GFF2181 at 880.881 kb on + strand, within GFF2181 at 881.184 kb on + strand, within GFF2181 at 881.184 kb on + strand, within GFF2181 at 881.184 kb on + strand, within GFF2181 at 881.185 kb on - strand, within GFF2181 at 881.185 kb on - strand, within GFF2181 at 881.185 kb on - strand, within GFF2181 at 881.185 kb on - strand, within GFF2181 at 881.281 kb on - strand at 881.330 kb on + strand at 881.334 kb on - strand at 881.337 kb on + strand at 881.428 kb on + strand at 881.429 kb on - strand at 881.549 kb on + strand at 881.659 kb on + strand at 881.659 kb on + strand at 881.660 kb on - strand at 881.660 kb on - strand at 881.725 kb on - strand at 881.779 kb on + strand at 881.780 kb on - strand at 881.888 kb on + strand, within GFF2182 at 882.014 kb on + strand at 882.014 kb on + strand at 882.117 kb on + strand at 882.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 879,365 + GFF2179 0.83 +0.6 879,381 - GFF2179 0.85 +0.5 879,383 + GFF2179 0.85 -0.1 879,383 + GFF2179 0.85 +0.8 879,383 + GFF2179 0.85 -0.2 879,384 - GFF2179 0.85 +0.5 879,677 - GFF2180 0.27 +0.2 879,712 + GFF2180 0.34 -1.1 879,820 + GFF2180 0.53 -1.8 879,820 + GFF2180 0.53 +1.0 879,820 + GFF2180 0.53 +0.4 879,820 + GFF2180 0.53 +0.1 879,821 - GFF2180 0.53 -1.5 879,847 + GFF2180 0.58 +0.5 879,847 + GFF2180 0.58 +0.4 879,848 - GFF2180 0.58 -0.0 879,848 - GFF2180 0.58 +0.6 879,961 + GFF2180 0.79 -1.2 880,094 - -0.4 880,094 - -0.9 880,147 - -0.3 880,184 + +0.7 880,211 + -1.0 880,212 - -0.1 880,212 - -1.1 880,212 - -1.1 880,298 + +0.3 880,299 - +1.2 880,686 + GFF2181 0.35 +0.7 880,686 + GFF2181 0.35 +0.5 880,687 - GFF2181 0.35 -1.0 880,687 - GFF2181 0.35 -0.1 880,881 + GFF2181 0.56 -1.4 881,184 + GFF2181 0.89 +0.6 881,184 + GFF2181 0.89 -0.7 881,184 + GFF2181 0.89 -1.6 881,185 - GFF2181 0.89 -1.0 881,185 - GFF2181 0.89 -0.2 881,185 - GFF2181 0.89 -0.7 881,185 - GFF2181 0.89 -0.9 881,281 - +0.5 881,330 + -2.0 881,334 - -0.3 881,337 + +0.4 881,428 + +0.3 881,429 - -0.8 881,549 + +0.5 881,659 + -0.7 881,659 + -0.5 881,660 - -0.6 881,660 - -0.3 881,725 - -0.5 881,779 + -0.7 881,780 - +0.6 881,888 + GFF2182 0.36 -0.2 882,014 + +0.9 882,014 + +1.0 882,117 + -0.2 882,118 - -0.9
Or see this region's nucleotide sequence