Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2179 and GFF2180 overlap by 4 nucleotides GFF2180 and GFF2181 are separated by 288 nucleotides
GFF2179 - Phthiocerol synthesis polyketide synthase type I PpsC, at 878,545 to 879,531
GFF2179
GFF2180 - hypothetical protein, at 879,528 to 880,076
GFF2180
GFF2181 - HTH-type transcriptional regulator DmlR, at 880,365 to 881,282
GFF2181
Position (kb) 879
880
881 Strain fitness (log2 ratio) -2
-1
0
1 at 878.630 kb on + strand at 878.630 kb on + strand at 878.874 kb on - strand, within GFF2179 at 878.961 kb on - strand, within GFF2179 at 878.961 kb on - strand, within GFF2179 at 879.108 kb on + strand, within GFF2179 at 879.109 kb on - strand, within GFF2179 at 879.109 kb on - strand, within GFF2179 at 879.109 kb on - strand, within GFF2179 at 879.109 kb on - strand, within GFF2179 at 879.109 kb on - strand, within GFF2179 at 879.239 kb on + strand, within GFF2179 at 879.240 kb on - strand, within GFF2179 at 879.248 kb on + strand, within GFF2179 at 879.249 kb on - strand, within GFF2179 at 879.249 kb on - strand, within GFF2179 at 879.365 kb on + strand, within GFF2179 at 879.381 kb on - strand, within GFF2179 at 879.383 kb on + strand, within GFF2179 at 879.383 kb on + strand, within GFF2179 at 879.383 kb on + strand, within GFF2179 at 879.384 kb on - strand, within GFF2179 at 879.677 kb on - strand, within GFF2180 at 879.712 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.820 kb on + strand, within GFF2180 at 879.821 kb on - strand, within GFF2180 at 879.847 kb on + strand, within GFF2180 at 879.847 kb on + strand, within GFF2180 at 879.848 kb on - strand, within GFF2180 at 879.848 kb on - strand, within GFF2180 at 879.961 kb on + strand, within GFF2180 at 880.094 kb on - strand at 880.094 kb on - strand at 880.147 kb on - strand at 880.184 kb on + strand at 880.211 kb on + strand at 880.212 kb on - strand at 880.212 kb on - strand at 880.212 kb on - strand at 880.298 kb on + strand at 880.299 kb on - strand at 880.686 kb on + strand, within GFF2181 at 880.686 kb on + strand, within GFF2181 at 880.687 kb on - strand, within GFF2181 at 880.687 kb on - strand, within GFF2181 at 880.881 kb on + strand, within GFF2181
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 878,630 + +0.4 878,630 + +0.4 878,874 - GFF2179 0.33 -1.1 878,961 - GFF2179 0.42 -0.5 878,961 - GFF2179 0.42 +0.1 879,108 + GFF2179 0.57 -0.3 879,109 - GFF2179 0.57 +1.1 879,109 - GFF2179 0.57 -0.9 879,109 - GFF2179 0.57 +1.3 879,109 - GFF2179 0.57 -0.3 879,109 - GFF2179 0.57 +0.2 879,239 + GFF2179 0.70 +1.3 879,240 - GFF2179 0.70 -0.8 879,248 + GFF2179 0.71 -1.2 879,249 - GFF2179 0.71 +0.1 879,249 - GFF2179 0.71 -1.4 879,365 + GFF2179 0.83 +0.6 879,381 - GFF2179 0.85 +0.5 879,383 + GFF2179 0.85 -0.1 879,383 + GFF2179 0.85 +0.8 879,383 + GFF2179 0.85 -0.2 879,384 - GFF2179 0.85 +0.5 879,677 - GFF2180 0.27 +0.2 879,712 + GFF2180 0.34 -1.1 879,820 + GFF2180 0.53 -1.8 879,820 + GFF2180 0.53 +1.0 879,820 + GFF2180 0.53 +0.4 879,820 + GFF2180 0.53 +0.1 879,821 - GFF2180 0.53 -1.5 879,847 + GFF2180 0.58 +0.5 879,847 + GFF2180 0.58 +0.4 879,848 - GFF2180 0.58 -0.0 879,848 - GFF2180 0.58 +0.6 879,961 + GFF2180 0.79 -1.2 880,094 - -0.4 880,094 - -0.9 880,147 - -0.3 880,184 + +0.7 880,211 + -1.0 880,212 - -0.1 880,212 - -1.1 880,212 - -1.1 880,298 + +0.3 880,299 - +1.2 880,686 + GFF2181 0.35 +0.7 880,686 + GFF2181 0.35 +0.5 880,687 - GFF2181 0.35 -1.0 880,687 - GFF2181 0.35 -0.1 880,881 + GFF2181 0.56 -1.4
Or see this region's nucleotide sequence