Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2171 and GFF2172 overlap by 4 nucleotides GFF2172 and GFF2173 are separated by 256 nucleotides GFF2173 and GFF2174 are separated by 35 nucleotides
GFF2171 - Aldehyde oxidoreductase FAD-binding subunit PaoB, at 869,768 to 870,718
GFF2171
GFF2172 - Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA, at 870,715 to 871,359
GFF2172
GFF2173 - Colistin resistance protein EmrB, at 871,616 to 873,229
GFF2173
GFF2174 - Colistin resistance protein EmrA, at 873,265 to 874,515
GFF2174
Position (kb) 871
872
873
874 Strain fitness (log2 ratio) -2
-1
0
1
2 at 870.703 kb on - strand at 870.703 kb on - strand at 870.703 kb on - strand at 870.764 kb on + strand at 870.783 kb on + strand, within GFF2172 at 870.783 kb on + strand, within GFF2172 at 870.784 kb on - strand, within GFF2172 at 870.784 kb on - strand, within GFF2172 at 870.784 kb on - strand, within GFF2172 at 870.784 kb on - strand, within GFF2172 at 870.935 kb on + strand, within GFF2172 at 870.935 kb on + strand, within GFF2172 at 871.002 kb on - strand, within GFF2172 at 871.048 kb on + strand, within GFF2172 at 871.115 kb on + strand, within GFF2172 at 871.335 kb on + strand at 871.336 kb on - strand at 871.707 kb on + strand at 871.707 kb on + strand at 871.707 kb on + strand at 871.707 kb on + strand at 871.707 kb on + strand at 871.707 kb on + strand at 871.708 kb on - strand at 871.708 kb on - strand at 871.708 kb on - strand at 871.708 kb on - strand at 872.122 kb on + strand, within GFF2173 at 872.122 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.298 kb on + strand, within GFF2173 at 872.299 kb on - strand, within GFF2173 at 872.299 kb on - strand, within GFF2173 at 872.299 kb on - strand, within GFF2173 at 872.299 kb on - strand, within GFF2173 at 872.299 kb on - strand, within GFF2173 at 872.299 kb on - strand, within GFF2173 at 872.299 kb on - strand, within GFF2173 at 872.299 kb on - strand, within GFF2173 at 872.310 kb on + strand, within GFF2173 at 872.311 kb on - strand, within GFF2173 at 872.311 kb on - strand, within GFF2173 at 872.311 kb on - strand, within GFF2173 at 872.466 kb on + strand, within GFF2173 at 872.466 kb on + strand, within GFF2173 at 872.466 kb on + strand, within GFF2173 at 872.466 kb on + strand, within GFF2173 at 872.467 kb on - strand, within GFF2173 at 872.467 kb on - strand, within GFF2173 at 872.467 kb on - strand, within GFF2173 at 872.467 kb on - strand, within GFF2173 at 872.467 kb on - strand, within GFF2173 at 872.467 kb on - strand, within GFF2173 at 872.467 kb on - strand, within GFF2173 at 872.467 kb on - strand, within GFF2173 at 872.688 kb on + strand, within GFF2173 at 872.689 kb on - strand, within GFF2173 at 872.785 kb on - strand, within GFF2173 at 872.844 kb on + strand, within GFF2173 at 872.994 kb on + strand, within GFF2173 at 872.994 kb on + strand, within GFF2173 at 872.995 kb on - strand, within GFF2173 at 872.995 kb on - strand, within GFF2173 at 872.995 kb on - strand, within GFF2173 at 872.995 kb on - strand, within GFF2173 at 872.995 kb on - strand, within GFF2173 at 873.018 kb on - strand, within GFF2173 at 873.524 kb on + strand, within GFF2174 at 873.536 kb on + strand, within GFF2174 at 873.536 kb on + strand, within GFF2174 at 873.537 kb on - strand, within GFF2174 at 873.537 kb on - strand, within GFF2174 at 873.537 kb on - strand, within GFF2174 at 873.602 kb on + strand, within GFF2174 at 873.602 kb on + strand, within GFF2174 at 873.602 kb on + strand, within GFF2174 at 873.602 kb on + strand, within GFF2174 at 873.602 kb on + strand, within GFF2174 at 873.603 kb on - strand, within GFF2174 at 873.886 kb on + strand, within GFF2174 at 874.101 kb on - strand, within GFF2174 at 874.101 kb on - strand, within GFF2174 at 874.101 kb on - strand, within GFF2174 at 874.179 kb on - strand, within GFF2174 at 874.223 kb on + strand, within GFF2174 at 874.224 kb on - strand, within GFF2174 at 874.224 kb on - strand, within GFF2174 at 874.224 kb on - strand, within GFF2174
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 870,703 - +0.3 870,703 - -0.8 870,703 - -0.3 870,764 + +0.2 870,783 + GFF2172 0.11 -1.6 870,783 + GFF2172 0.11 +0.1 870,784 - GFF2172 0.11 +2.0 870,784 - GFF2172 0.11 -1.1 870,784 - GFF2172 0.11 -0.7 870,784 - GFF2172 0.11 +0.1 870,935 + GFF2172 0.34 -0.7 870,935 + GFF2172 0.34 -0.2 871,002 - GFF2172 0.44 +0.6 871,048 + GFF2172 0.52 +0.5 871,115 + GFF2172 0.62 +0.2 871,335 + -0.8 871,336 - +0.8 871,707 + +0.1 871,707 + +0.6 871,707 + -0.3 871,707 + -1.1 871,707 + -0.1 871,707 + -0.3 871,708 - +0.3 871,708 - -0.2 871,708 - -0.1 871,708 - +0.6 872,122 + GFF2173 0.31 +0.6 872,122 + GFF2173 0.31 +0.4 872,298 + GFF2173 0.42 +0.1 872,298 + GFF2173 0.42 -0.8 872,298 + GFF2173 0.42 -0.7 872,298 + GFF2173 0.42 -0.4 872,298 + GFF2173 0.42 -0.8 872,298 + GFF2173 0.42 -0.4 872,298 + GFF2173 0.42 -1.6 872,298 + GFF2173 0.42 +1.2 872,298 + GFF2173 0.42 +0.3 872,298 + GFF2173 0.42 +2.2 872,298 + GFF2173 0.42 -0.3 872,298 + GFF2173 0.42 +0.1 872,298 + GFF2173 0.42 -0.7 872,299 - GFF2173 0.42 -0.8 872,299 - GFF2173 0.42 +0.1 872,299 - GFF2173 0.42 -0.5 872,299 - GFF2173 0.42 +0.5 872,299 - GFF2173 0.42 -0.9 872,299 - GFF2173 0.42 -0.5 872,299 - GFF2173 0.42 +2.0 872,299 - GFF2173 0.42 -0.4 872,310 + GFF2173 0.43 -1.0 872,311 - GFF2173 0.43 -1.1 872,311 - GFF2173 0.43 +0.7 872,311 - GFF2173 0.43 -0.2 872,466 + GFF2173 0.53 -0.7 872,466 + GFF2173 0.53 +1.6 872,466 + GFF2173 0.53 +0.1 872,466 + GFF2173 0.53 -0.2 872,467 - GFF2173 0.53 -0.4 872,467 - GFF2173 0.53 -2.5 872,467 - GFF2173 0.53 -0.3 872,467 - GFF2173 0.53 +1.2 872,467 - GFF2173 0.53 -1.7 872,467 - GFF2173 0.53 -0.2 872,467 - GFF2173 0.53 +0.3 872,467 - GFF2173 0.53 +0.1 872,688 + GFF2173 0.66 -2.1 872,689 - GFF2173 0.66 +1.0 872,785 - GFF2173 0.72 +2.4 872,844 + GFF2173 0.76 -0.7 872,994 + GFF2173 0.85 -1.4 872,994 + GFF2173 0.85 +0.4 872,995 - GFF2173 0.85 +1.4 872,995 - GFF2173 0.85 +0.1 872,995 - GFF2173 0.85 +0.3 872,995 - GFF2173 0.85 -0.8 872,995 - GFF2173 0.85 +0.2 873,018 - GFF2173 0.87 -0.2 873,524 + GFF2174 0.21 -0.1 873,536 + GFF2174 0.22 +0.3 873,536 + GFF2174 0.22 +0.1 873,537 - GFF2174 0.22 -0.7 873,537 - GFF2174 0.22 -0.1 873,537 - GFF2174 0.22 +0.2 873,602 + GFF2174 0.27 +1.0 873,602 + GFF2174 0.27 +0.1 873,602 + GFF2174 0.27 -0.8 873,602 + GFF2174 0.27 -0.2 873,602 + GFF2174 0.27 -0.4 873,603 - GFF2174 0.27 +0.4 873,886 + GFF2174 0.50 -0.0 874,101 - GFF2174 0.67 -0.1 874,101 - GFF2174 0.67 +0.2 874,101 - GFF2174 0.67 +0.0 874,179 - GFF2174 0.73 +2.4 874,223 + GFF2174 0.77 -1.5 874,224 - GFF2174 0.77 -0.9 874,224 - GFF2174 0.77 -0.2 874,224 - GFF2174 0.77 +0.1
Or see this region's nucleotide sequence