Strain Fitness in Xanthobacter sp. DMC5 around GFF217

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF216 and GFF217 are separated by 51 nucleotidesGFF217 and GFF218 are separated by 177 nucleotides GFF216 - Chromosome partition protein Smc, at 226,618 to 228,036 GFF216 GFF217 - hypothetical protein, at 228,088 to 228,720 GFF217 GFF218 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 228,898 to 229,740 GFF218 Position (kb) 228 229Strain fitness (log2 ratio) -1 0 1at 227.964 kb on + strandat 227.965 kb on - strandat 227.965 kb on - strandat 228.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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227,964 + -0.6
227,965 - +1.5
227,965 - -0.1
228,900 - +0.3

Or see this region's nucleotide sequence