Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF214 and GFF215 are separated by 4 nucleotides GFF215 and GFF216 are separated by 48 nucleotides GFF216 and GFF217 are separated by 51 nucleotides GFF217 and GFF218 are separated by 177 nucleotides
GFF214 - hypothetical protein, at 225,363 to 226,154
GFF214
GFF215 - hypothetical protein, at 226,159 to 226,569
GFF215
GFF216 - Chromosome partition protein Smc, at 226,618 to 228,036
GFF216
GFF217 - hypothetical protein, at 228,088 to 228,720
GFF217
GFF218 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 228,898 to 229,740
GFF218
Position (kb) 226
227
228
229 Strain fitness (log2 ratio) -1
0
1 at 225.682 kb on - strand, within GFF214 at 225.730 kb on - strand, within GFF214 at 225.768 kb on + strand, within GFF214 at 225.898 kb on - strand, within GFF214 at 225.898 kb on - strand, within GFF214 at 225.904 kb on - strand, within GFF214 at 225.972 kb on - strand, within GFF214 at 226.352 kb on + strand, within GFF215 at 226.352 kb on + strand, within GFF215 at 226.353 kb on - strand, within GFF215 at 226.353 kb on - strand, within GFF215 at 226.353 kb on - strand, within GFF215 at 227.964 kb on + strand at 227.965 kb on - strand at 227.965 kb on - strand at 228.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 225,682 - GFF214 0.40 +0.2 225,730 - GFF214 0.46 +0.4 225,768 + GFF214 0.51 -1.7 225,898 - GFF214 0.68 -0.4 225,898 - GFF214 0.68 +0.6 225,904 - GFF214 0.68 +0.3 225,972 - GFF214 0.77 -1.5 226,352 + GFF215 0.47 +0.3 226,352 + GFF215 0.47 -0.3 226,353 - GFF215 0.47 +0.6 226,353 - GFF215 0.47 +0.2 226,353 - GFF215 0.47 -0.9 227,964 + -0.6 227,965 - +1.5 227,965 - -0.1 228,900 - +0.3
Or see this region's nucleotide sequence