Strain Fitness in Xanthobacter sp. DMC5 around GFF2155

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2154 and GFF2155 are separated by 123 nucleotidesGFF2155 and GFF2156 are separated by 76 nucleotides GFF2154 - Chaperone protein DnaK, at 844,181 to 845,431 GFF2154 GFF2155 - Homoserine O-acetyltransferase, at 845,555 to 848,089 GFF2155 GFF2156 - Tropinesterase, at 848,166 to 849,020 GFF2156 Position (kb) 845 846 847 848 849Strain fitness (log2 ratio) -2 -1 0 1 2at 844.717 kb on + strand, within GFF2154at 844.717 kb on + strand, within GFF2154at 844.928 kb on + strand, within GFF2154at 844.929 kb on - strand, within GFF2154at 844.967 kb on + strand, within GFF2154at 844.968 kb on - strand, within GFF2154at 844.968 kb on - strand, within GFF2154at 844.968 kb on - strand, within GFF2154at 844.968 kb on - strand, within GFF2154at 844.968 kb on - strand, within GFF2154at 845.232 kb on + strand, within GFF2154at 845.233 kb on - strand, within GFF2154at 845.562 kb on - strandat 845.624 kb on + strandat 845.625 kb on - strandat 845.727 kb on - strandat 845.759 kb on + strandat 845.759 kb on + strandat 845.760 kb on - strandat 845.760 kb on - strandat 845.760 kb on - strandat 845.849 kb on + strand, within GFF2155at 845.850 kb on - strand, within GFF2155at 845.850 kb on - strand, within GFF2155at 845.850 kb on - strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 846.023 kb on + strand, within GFF2155at 846.023 kb on + strand, within GFF2155at 846.024 kb on - strand, within GFF2155at 846.024 kb on - strand, within GFF2155at 846.024 kb on - strand, within GFF2155at 846.026 kb on + strand, within GFF2155at 846.027 kb on - strand, within GFF2155at 846.027 kb on - strand, within GFF2155at 846.104 kb on + strand, within GFF2155at 846.110 kb on + strand, within GFF2155at 846.110 kb on + strand, within GFF2155at 846.110 kb on + strand, within GFF2155at 846.110 kb on + strand, within GFF2155at 846.134 kb on + strand, within GFF2155at 846.134 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.374 kb on + strand, within GFF2155at 846.374 kb on + strand, within GFF2155at 846.375 kb on - strand, within GFF2155at 846.375 kb on - strand, within GFF2155at 846.375 kb on - strand, within GFF2155at 846.503 kb on + strand, within GFF2155at 846.605 kb on + strand, within GFF2155at 846.605 kb on + strand, within GFF2155at 846.606 kb on - strand, within GFF2155at 846.606 kb on - strand, within GFF2155at 846.606 kb on - strand, within GFF2155at 846.606 kb on - strand, within GFF2155at 846.606 kb on - strand, within GFF2155at 846.606 kb on - strand, within GFF2155at 846.606 kb on - strand, within GFF2155at 846.759 kb on - strand, within GFF2155at 846.759 kb on - strand, within GFF2155at 846.866 kb on + strand, within GFF2155at 846.867 kb on - strand, within GFF2155at 846.867 kb on - strand, within GFF2155at 846.932 kb on + strand, within GFF2155at 846.932 kb on + strand, within GFF2155at 846.933 kb on - strand, within GFF2155at 846.933 kb on - strand, within GFF2155at 846.995 kb on + strand, within GFF2155at 846.996 kb on - strand, within GFF2155at 846.996 kb on - strand, within GFF2155at 847.007 kb on + strand, within GFF2155at 847.007 kb on + strand, within GFF2155at 847.008 kb on - strand, within GFF2155at 847.076 kb on + strand, within GFF2155at 847.077 kb on - strand, within GFF2155at 847.143 kb on - strand, within GFF2155at 847.256 kb on + strand, within GFF2155at 847.295 kb on + strand, within GFF2155at 847.361 kb on + strand, within GFF2155at 847.362 kb on - strand, within GFF2155at 847.362 kb on - strand, within GFF2155at 847.362 kb on - strand, within GFF2155at 847.572 kb on - strand, within GFF2155at 847.592 kb on + strand, within GFF2155at 847.592 kb on + strand, within GFF2155at 847.592 kb on + strand, within GFF2155at 847.593 kb on - strand, within GFF2155at 847.593 kb on - strand, within GFF2155at 847.685 kb on + strand, within GFF2155at 847.685 kb on + strand, within GFF2155at 847.685 kb on + strand, within GFF2155at 847.685 kb on + strand, within GFF2155at 847.685 kb on + strand, within GFF2155at 847.686 kb on - strand, within GFF2155at 847.686 kb on - strand, within GFF2155at 847.686 kb on - strand, within GFF2155at 847.730 kb on + strand, within GFF2155at 847.730 kb on + strand, within GFF2155at 847.731 kb on - strand, within GFF2155at 847.731 kb on - strand, within GFF2155at 847.731 kb on - strand, within GFF2155at 847.731 kb on - strand, within GFF2155at 847.731 kb on - strand, within GFF2155at 847.899 kb on - strandat 848.087 kb on + strandat 848.087 kb on + strandat 848.087 kb on + strandat 848.088 kb on - strandat 848.379 kb on + strand, within GFF2156at 848.600 kb on + strand, within GFF2156at 848.716 kb on + strand, within GFF2156at 848.898 kb on + strand, within GFF2156at 848.983 kb on - strandat 848.983 kb on - strandat 848.991 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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844,717 + GFF2154 0.43 +0.5
844,717 + GFF2154 0.43 -0.4
844,928 + GFF2154 0.60 -0.1
844,929 - GFF2154 0.60 -0.1
844,967 + GFF2154 0.63 -1.2
844,968 - GFF2154 0.63 -0.2
844,968 - GFF2154 0.63 +0.6
844,968 - GFF2154 0.63 -1.4
844,968 - GFF2154 0.63 +1.2
844,968 - GFF2154 0.63 +0.3
845,232 + GFF2154 0.84 +0.2
845,233 - GFF2154 0.84 +0.3
845,562 - -0.1
845,624 + +0.5
845,625 - -0.1
845,727 - +0.5
845,759 + -0.4
845,759 + +1.9
845,760 - -0.7
845,760 - -0.8
845,760 - -1.2
845,849 + GFF2155 0.12 +0.4
845,850 - GFF2155 0.12 +0.8
845,850 - GFF2155 0.12 -0.0
845,850 - GFF2155 0.12 +0.3
845,945 + GFF2155 0.15 -0.3
845,945 + GFF2155 0.15 +0.1
845,945 + GFF2155 0.15 +0.3
845,945 + GFF2155 0.15 -0.3
845,945 + GFF2155 0.15 -1.6
845,945 + GFF2155 0.15 -0.2
845,946 - GFF2155 0.15 -0.5
845,946 - GFF2155 0.15 +1.1
845,946 - GFF2155 0.15 -0.3
845,946 - GFF2155 0.15 -0.4
845,946 - GFF2155 0.15 +0.7
845,946 - GFF2155 0.15 +0.9
845,946 - GFF2155 0.15 +0.6
845,946 - GFF2155 0.15 -0.6
846,023 + GFF2155 0.18 -1.3
846,023 + GFF2155 0.18 -0.5
846,024 - GFF2155 0.19 +0.4
846,024 - GFF2155 0.19 -1.4
846,024 - GFF2155 0.19 -0.1
846,026 + GFF2155 0.19 -0.1
846,027 - GFF2155 0.19 -2.1
846,027 - GFF2155 0.19 -0.0
846,104 + GFF2155 0.22 -1.3
846,110 + GFF2155 0.22 -0.1
846,110 + GFF2155 0.22 +0.6
846,110 + GFF2155 0.22 +0.1
846,110 + GFF2155 0.22 -0.7
846,134 + GFF2155 0.23 +0.3
846,134 + GFF2155 0.23 +1.6
846,212 + GFF2155 0.26 +0.8
846,212 + GFF2155 0.26 -0.9
846,212 + GFF2155 0.26 -0.9
846,212 + GFF2155 0.26 +0.8
846,212 + GFF2155 0.26 +1.5
846,212 + GFF2155 0.26 -0.3
846,213 - GFF2155 0.26 +0.5
846,213 - GFF2155 0.26 +0.3
846,213 - GFF2155 0.26 -0.3
846,213 - GFF2155 0.26 -0.0
846,213 - GFF2155 0.26 +0.2
846,213 - GFF2155 0.26 +0.8
846,213 - GFF2155 0.26 -0.5
846,213 - GFF2155 0.26 -1.2
846,213 - GFF2155 0.26 +0.9
846,213 - GFF2155 0.26 -1.3
846,213 - GFF2155 0.26 +0.4
846,374 + GFF2155 0.32 -1.0
846,374 + GFF2155 0.32 +0.3
846,375 - GFF2155 0.32 -0.6
846,375 - GFF2155 0.32 -1.2
846,375 - GFF2155 0.32 +1.4
846,503 + GFF2155 0.37 -0.2
846,605 + GFF2155 0.41 +0.0
846,605 + GFF2155 0.41 +0.3
846,606 - GFF2155 0.41 -0.0
846,606 - GFF2155 0.41 -0.7
846,606 - GFF2155 0.41 +1.6
846,606 - GFF2155 0.41 -0.2
846,606 - GFF2155 0.41 +0.9
846,606 - GFF2155 0.41 +1.6
846,606 - GFF2155 0.41 +0.7
846,759 - GFF2155 0.47 -0.1
846,759 - GFF2155 0.47 -0.2
846,866 + GFF2155 0.52 -0.9
846,867 - GFF2155 0.52 -0.7
846,867 - GFF2155 0.52 -0.3
846,932 + GFF2155 0.54 -0.9
846,932 + GFF2155 0.54 +0.7
846,933 - GFF2155 0.54 -0.9
846,933 - GFF2155 0.54 +0.1
846,995 + GFF2155 0.57 +0.1
846,996 - GFF2155 0.57 +0.8
846,996 - GFF2155 0.57 -0.3
847,007 + GFF2155 0.57 -2.7
847,007 + GFF2155 0.57 -0.3
847,008 - GFF2155 0.57 -0.5
847,076 + GFF2155 0.60 +1.0
847,077 - GFF2155 0.60 -0.5
847,143 - GFF2155 0.63 +0.8
847,256 + GFF2155 0.67 +0.8
847,295 + GFF2155 0.69 +0.4
847,361 + GFF2155 0.71 +0.7
847,362 - GFF2155 0.71 -0.1
847,362 - GFF2155 0.71 -0.3
847,362 - GFF2155 0.71 -0.6
847,572 - GFF2155 0.80 -0.2
847,592 + GFF2155 0.80 -1.8
847,592 + GFF2155 0.80 -0.2
847,592 + GFF2155 0.80 +0.2
847,593 - GFF2155 0.80 +0.1
847,593 - GFF2155 0.80 -0.9
847,685 + GFF2155 0.84 +0.6
847,685 + GFF2155 0.84 -0.7
847,685 + GFF2155 0.84 +0.7
847,685 + GFF2155 0.84 -1.3
847,685 + GFF2155 0.84 -1.1
847,686 - GFF2155 0.84 -0.8
847,686 - GFF2155 0.84 -2.6
847,686 - GFF2155 0.84 -0.7
847,730 + GFF2155 0.86 -0.3
847,730 + GFF2155 0.86 -0.3
847,731 - GFF2155 0.86 -0.6
847,731 - GFF2155 0.86 -0.2
847,731 - GFF2155 0.86 -1.0
847,731 - GFF2155 0.86 +0.4
847,731 - GFF2155 0.86 +0.3
847,899 - +0.2
848,087 + -0.3
848,087 + -0.2
848,087 + -0.8
848,088 - -0.9
848,379 + GFF2156 0.25 -0.3
848,600 + GFF2156 0.51 -0.7
848,716 + GFF2156 0.64 +0.3
848,898 + GFF2156 0.86 -0.1
848,983 - -0.5
848,983 - -2.1
848,991 + -0.6

Or see this region's nucleotide sequence