Strain Fitness in Xanthobacter sp. DMC5 around GFF215

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF214 and GFF215 are separated by 4 nucleotidesGFF215 and GFF216 are separated by 48 nucleotides GFF214 - hypothetical protein, at 225,363 to 226,154 GFF214 GFF215 - hypothetical protein, at 226,159 to 226,569 GFF215 GFF216 - Chromosome partition protein Smc, at 226,618 to 228,036 GFF216 Position (kb) 226 227Strain fitness (log2 ratio) -1 0 1at 225.289 kb on + strandat 225.340 kb on + strandat 225.682 kb on - strand, within GFF214at 225.730 kb on - strand, within GFF214at 225.768 kb on + strand, within GFF214at 225.898 kb on - strand, within GFF214at 225.898 kb on - strand, within GFF214at 225.904 kb on - strand, within GFF214at 225.972 kb on - strand, within GFF214at 226.352 kb on + strand, within GFF215at 226.352 kb on + strand, within GFF215at 226.353 kb on - strand, within GFF215at 226.353 kb on - strand, within GFF215at 226.353 kb on - strand, within GFF215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
225,289 + +0.5
225,340 + -0.3
225,682 - GFF214 0.40 +0.2
225,730 - GFF214 0.46 +0.4
225,768 + GFF214 0.51 -1.7
225,898 - GFF214 0.68 -0.4
225,898 - GFF214 0.68 +0.6
225,904 - GFF214 0.68 +0.3
225,972 - GFF214 0.77 -1.5
226,352 + GFF215 0.47 +0.3
226,352 + GFF215 0.47 -0.3
226,353 - GFF215 0.47 +0.6
226,353 - GFF215 0.47 +0.2
226,353 - GFF215 0.47 -0.9

Or see this region's nucleotide sequence