Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2144 and GFF2145 are separated by 5 nucleotides GFF2145 and GFF2146 are separated by 97 nucleotides GFF2146 and GFF2147 are separated by 2 nucleotides GFF2147 and GFF2148 are separated by 20 nucleotides
GFF2144 - Nitrilase, at 833,346 to 834,278
GFF2144
GFF2145 - hypothetical protein, at 834,284 to 834,970
GFF2145
GFF2146 - hypothetical protein, at 835,068 to 836,120
GFF2146
GFF2147 - Bicarbonate transport ATP-binding protein CmpD, at 836,123 to 836,962
GFF2147
GFF2148 - Putative aliphatic sulfonates transport permease protein SsuC, at 836,983 to 837,828
GFF2148
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1 at 834.156 kb on + strand, within GFF2144 at 834.447 kb on + strand, within GFF2145 at 834.792 kb on + strand, within GFF2145 at 834.792 kb on + strand, within GFF2145 at 834.961 kb on + strand at 835.095 kb on + strand at 835.095 kb on + strand at 835.096 kb on - strand at 835.096 kb on - strand at 835.096 kb on - strand at 835.294 kb on + strand, within GFF2146 at 835.294 kb on + strand, within GFF2146 at 835.546 kb on + strand, within GFF2146 at 835.546 kb on + strand, within GFF2146 at 835.546 kb on + strand, within GFF2146 at 835.547 kb on - strand, within GFF2146 at 835.547 kb on - strand, within GFF2146 at 835.547 kb on - strand, within GFF2146 at 835.547 kb on - strand, within GFF2146 at 835.699 kb on + strand, within GFF2146 at 835.759 kb on - strand, within GFF2146 at 835.916 kb on - strand, within GFF2146 at 836.125 kb on - strand at 836.601 kb on + strand, within GFF2147 at 836.640 kb on + strand, within GFF2147 at 836.640 kb on + strand, within GFF2147 at 836.641 kb on - strand, within GFF2147 at 836.641 kb on - strand, within GFF2147 at 836.859 kb on + strand, within GFF2147 at 836.859 kb on + strand, within GFF2147 at 836.860 kb on - strand, within GFF2147 at 836.860 kb on - strand, within GFF2147 at 836.860 kb on - strand, within GFF2147 at 836.966 kb on + strand at 836.967 kb on - strand at 837.094 kb on - strand, within GFF2148 at 837.094 kb on - strand, within GFF2148
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 834,156 + GFF2144 0.87 +0.2 834,447 + GFF2145 0.24 -1.5 834,792 + GFF2145 0.74 -1.2 834,792 + GFF2145 0.74 +0.8 834,961 + -2.6 835,095 + +0.4 835,095 + +0.2 835,096 - -1.1 835,096 - -0.8 835,096 - +0.2 835,294 + GFF2146 0.21 +0.8 835,294 + GFF2146 0.21 -2.6 835,546 + GFF2146 0.45 +0.5 835,546 + GFF2146 0.45 +0.4 835,546 + GFF2146 0.45 -0.1 835,547 - GFF2146 0.45 +0.3 835,547 - GFF2146 0.45 -0.7 835,547 - GFF2146 0.45 +0.8 835,547 - GFF2146 0.45 -0.7 835,699 + GFF2146 0.60 -2.4 835,759 - GFF2146 0.66 +0.1 835,916 - GFF2146 0.81 +0.8 836,125 - +0.3 836,601 + GFF2147 0.57 +0.2 836,640 + GFF2147 0.62 -0.2 836,640 + GFF2147 0.62 +0.5 836,641 - GFF2147 0.62 -0.8 836,641 - GFF2147 0.62 +0.3 836,859 + GFF2147 0.88 -0.9 836,859 + GFF2147 0.88 +0.4 836,860 - GFF2147 0.88 +0.2 836,860 - GFF2147 0.88 -0.9 836,860 - GFF2147 0.88 +1.0 836,966 + -0.8 836,967 - +0.4 837,094 - GFF2148 0.13 -1.6 837,094 - GFF2148 0.13 -0.9
Or see this region's nucleotide sequence