Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2140 and GFF2141 are separated by 136 nucleotides GFF2141 and GFF2142 are separated by 11 nucleotides GFF2142 and GFF2143 are separated by 136 nucleotides
GFF2140 - Inner membrane transport protein RhmT, at 828,769 to 830,079
GFF2140
GFF2141 - 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)), at 830,216 to 830,968
GFF2141
GFF2142 - Ureidoglycolate lyase, at 830,980 to 831,822
GFF2142
GFF2143 - HTH-type transcriptional regulator GbpR, at 831,959 to 832,984
GFF2143
Position (kb) 830
831
832 Strain fitness (log2 ratio) -1
0
1
2
3 at 830.000 kb on + strand at 830.000 kb on + strand at 830.000 kb on + strand at 830.000 kb on + strand at 830.000 kb on + strand at 830.001 kb on - strand at 830.001 kb on - strand at 830.001 kb on - strand at 830.001 kb on - strand at 830.001 kb on - strand at 830.034 kb on + strand at 830.034 kb on + strand at 830.035 kb on - strand at 830.220 kb on + strand at 830.220 kb on + strand at 830.499 kb on + strand, within GFF2141 at 830.500 kb on - strand, within GFF2141 at 830.645 kb on + strand, within GFF2141 at 830.646 kb on - strand, within GFF2141 at 831.057 kb on - strand at 831.057 kb on - strand at 831.057 kb on - strand at 831.146 kb on + strand, within GFF2142 at 831.146 kb on + strand, within GFF2142 at 831.146 kb on + strand, within GFF2142 at 831.147 kb on - strand, within GFF2142 at 831.147 kb on - strand, within GFF2142 at 831.147 kb on - strand, within GFF2142 at 831.374 kb on + strand, within GFF2142 at 831.413 kb on + strand, within GFF2142 at 831.413 kb on + strand, within GFF2142 at 831.413 kb on + strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.414 kb on - strand, within GFF2142 at 831.584 kb on + strand, within GFF2142 at 831.585 kb on - strand, within GFF2142 at 831.585 kb on - strand, within GFF2142 at 831.726 kb on + strand, within GFF2142 at 831.939 kb on + strand at 831.940 kb on - strand at 831.940 kb on - strand at 831.940 kb on - strand at 831.940 kb on - strand at 831.940 kb on - strand at 831.952 kb on + strand at 832.193 kb on + strand, within GFF2143 at 832.193 kb on + strand, within GFF2143 at 832.193 kb on + strand, within GFF2143 at 832.193 kb on + strand, within GFF2143 at 832.193 kb on + strand, within GFF2143 at 832.193 kb on + strand, within GFF2143 at 832.194 kb on - strand, within GFF2143 at 832.194 kb on - strand, within GFF2143 at 832.194 kb on - strand, within GFF2143 at 832.194 kb on - strand, within GFF2143 at 832.806 kb on - strand, within GFF2143
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 830,000 + -0.1 830,000 + +0.3 830,000 + -0.8 830,000 + -0.9 830,000 + +1.0 830,001 - +0.2 830,001 - +1.7 830,001 - +0.3 830,001 - +0.5 830,001 - -0.7 830,034 + -0.3 830,034 + -1.3 830,035 - -0.1 830,220 + -1.1 830,220 + -1.5 830,499 + GFF2141 0.38 +0.2 830,500 - GFF2141 0.38 -0.9 830,645 + GFF2141 0.57 +0.1 830,646 - GFF2141 0.57 +0.1 831,057 - -1.1 831,057 - -1.0 831,057 - +0.2 831,146 + GFF2142 0.20 +0.8 831,146 + GFF2142 0.20 +1.1 831,146 + GFF2142 0.20 -0.2 831,147 - GFF2142 0.20 -0.1 831,147 - GFF2142 0.20 +0.2 831,147 - GFF2142 0.20 +1.0 831,374 + GFF2142 0.47 -0.5 831,413 + GFF2142 0.51 +0.7 831,413 + GFF2142 0.51 +2.8 831,413 + GFF2142 0.51 -0.2 831,414 - GFF2142 0.51 +0.3 831,414 - GFF2142 0.51 +1.1 831,414 - GFF2142 0.51 -0.4 831,414 - GFF2142 0.51 +0.0 831,414 - GFF2142 0.51 -0.0 831,414 - GFF2142 0.51 -0.3 831,414 - GFF2142 0.51 +0.6 831,414 - GFF2142 0.51 +1.4 831,584 + GFF2142 0.72 +0.1 831,585 - GFF2142 0.72 -1.3 831,585 - GFF2142 0.72 +0.9 831,726 + GFF2142 0.88 -1.1 831,939 + +1.4 831,940 - +0.6 831,940 - -0.9 831,940 - -1.1 831,940 - -0.7 831,940 - +0.4 831,952 + -0.8 832,193 + GFF2143 0.23 +0.2 832,193 + GFF2143 0.23 +0.2 832,193 + GFF2143 0.23 +0.7 832,193 + GFF2143 0.23 +0.8 832,193 + GFF2143 0.23 +0.8 832,193 + GFF2143 0.23 -0.7 832,194 - GFF2143 0.23 +0.1 832,194 - GFF2143 0.23 +1.4 832,194 - GFF2143 0.23 +0.2 832,194 - GFF2143 0.23 -0.2 832,806 - GFF2143 0.83 +0.7
Or see this region's nucleotide sequence