Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2134 and GFF2135 are separated by 802 nucleotides GFF2135 and GFF2136 are separated by 96 nucleotides
GFF2134 - Prophage integrase IntA, at 819,123 to 820,334
GFF2134
GFF2135 - putative RNA polymerase sigma factor FecI, at 821,137 to 821,640
GFF2135
GFF2136 - hypothetical protein, at 821,737 to 822,696
GFF2136
Position (kb) 821
822 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 820.205 kb on - strand, within GFF2134 at 820.249 kb on + strand at 820.249 kb on + strand at 820.249 kb on + strand at 820.249 kb on + strand at 820.250 kb on - strand at 820.250 kb on - strand at 820.355 kb on - strand at 820.378 kb on + strand at 820.379 kb on - strand at 820.393 kb on + strand at 820.394 kb on - strand at 820.394 kb on - strand at 820.394 kb on - strand at 820.472 kb on - strand at 820.476 kb on + strand at 820.488 kb on + strand at 820.488 kb on + strand at 820.488 kb on + strand at 820.489 kb on - strand at 820.489 kb on - strand at 820.517 kb on - strand at 820.525 kb on + strand at 820.525 kb on + strand at 820.526 kb on - strand at 820.526 kb on - strand at 820.541 kb on - strand at 820.557 kb on + strand at 820.615 kb on + strand at 820.615 kb on + strand at 820.616 kb on - strand at 820.633 kb on + strand at 820.634 kb on - strand at 820.634 kb on - strand at 820.707 kb on + strand at 820.707 kb on + strand at 820.708 kb on - strand at 820.708 kb on - strand at 820.708 kb on - strand at 820.791 kb on + strand at 820.791 kb on + strand at 820.792 kb on - strand at 820.842 kb on + strand at 820.843 kb on - strand at 820.863 kb on - strand at 821.080 kb on - strand at 821.302 kb on + strand, within GFF2135 at 821.303 kb on - strand, within GFF2135 at 821.430 kb on + strand, within GFF2135 at 821.430 kb on + strand, within GFF2135 at 821.430 kb on + strand, within GFF2135 at 821.431 kb on - strand, within GFF2135 at 821.434 kb on + strand, within GFF2135 at 821.435 kb on - strand, within GFF2135 at 821.435 kb on - strand, within GFF2135 at 821.435 kb on - strand, within GFF2135 at 821.600 kb on - strand at 821.638 kb on + strand at 821.638 kb on + strand at 821.639 kb on - strand at 821.639 kb on - strand at 821.639 kb on - strand at 821.639 kb on - strand at 821.683 kb on + strand at 821.684 kb on - strand at 821.684 kb on - strand at 821.897 kb on - strand, within GFF2136 at 821.991 kb on + strand, within GFF2136 at 821.991 kb on + strand, within GFF2136 at 821.991 kb on + strand, within GFF2136 at 821.991 kb on + strand, within GFF2136 at 821.992 kb on - strand, within GFF2136 at 822.086 kb on + strand, within GFF2136 at 822.087 kb on - strand, within GFF2136 at 822.087 kb on - strand, within GFF2136 at 822.135 kb on + strand, within GFF2136 at 822.399 kb on + strand, within GFF2136 at 822.399 kb on + strand, within GFF2136
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 820,205 - GFF2134 0.89 -0.2 820,249 + +0.7 820,249 + +0.8 820,249 + -1.0 820,249 + -0.6 820,250 - -0.3 820,250 - +0.2 820,355 - +0.9 820,378 + -0.8 820,379 - +0.6 820,393 + -0.4 820,394 - +0.4 820,394 - +0.2 820,394 - +1.1 820,472 - -1.3 820,476 + -0.8 820,488 + +0.1 820,488 + -0.1 820,488 + -1.2 820,489 - +0.2 820,489 - +0.1 820,517 - -0.2 820,525 + -0.5 820,525 + -1.3 820,526 - +0.6 820,526 - +1.2 820,541 - -0.8 820,557 + +1.0 820,615 + -0.0 820,615 + -2.9 820,616 - -0.5 820,633 + +0.5 820,634 - +0.5 820,634 - -1.0 820,707 + +0.7 820,707 + +1.4 820,708 - -1.3 820,708 - -0.4 820,708 - +0.7 820,791 + -0.2 820,791 + +0.1 820,792 - -0.2 820,842 + +0.2 820,843 - -0.6 820,863 - -0.4 821,080 - +0.8 821,302 + GFF2135 0.33 -2.1 821,303 - GFF2135 0.33 -1.1 821,430 + GFF2135 0.58 +0.3 821,430 + GFF2135 0.58 -0.6 821,430 + GFF2135 0.58 +0.2 821,431 - GFF2135 0.58 +0.1 821,434 + GFF2135 0.59 -1.4 821,435 - GFF2135 0.59 -0.2 821,435 - GFF2135 0.59 +0.4 821,435 - GFF2135 0.59 +0.8 821,600 - -1.2 821,638 + -0.8 821,638 + -0.2 821,639 - +0.9 821,639 - -0.4 821,639 - -1.2 821,639 - -1.4 821,683 + -0.4 821,684 - -0.7 821,684 - +0.3 821,897 - GFF2136 0.17 -0.5 821,991 + GFF2136 0.26 -0.2 821,991 + GFF2136 0.26 -0.4 821,991 + GFF2136 0.26 +0.4 821,991 + GFF2136 0.26 -0.7 821,992 - GFF2136 0.27 +0.8 822,086 + GFF2136 0.36 -0.1 822,087 - GFF2136 0.36 +0.2 822,087 - GFF2136 0.36 +0.1 822,135 + GFF2136 0.41 -0.7 822,399 + GFF2136 0.69 -0.5 822,399 + GFF2136 0.69 +0.4
Or see this region's nucleotide sequence