Strain Fitness in Xanthobacter sp. DMC5 around GFF2114

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2112 and GFF2113 are separated by 322 nucleotidesGFF2113 and GFF2114 are separated by 23 nucleotidesGFF2114 and GFF2115 are separated by 101 nucleotides GFF2112 - hypothetical protein, at 799,516 to 799,722 GFF2112 GFF2113 - hypothetical protein, at 800,045 to 800,539 GFF2113 GFF2114 - hypothetical protein, at 800,563 to 801,534 GFF2114 GFF2115 - hypothetical protein, at 801,636 to 802,607 GFF2115 Position (kb) 800 801 802Strain fitness (log2 ratio) -2 -1 0 1 2at 799.616 kb on - strand, within GFF2112at 799.686 kb on + strand, within GFF2112at 799.686 kb on + strand, within GFF2112at 799.720 kb on + strandat 799.720 kb on + strandat 799.720 kb on + strandat 799.720 kb on + strandat 799.721 kb on - strandat 799.721 kb on - strandat 799.721 kb on - strandat 799.721 kb on - strandat 799.726 kb on + strandat 799.727 kb on - strandat 799.762 kb on - strandat 799.762 kb on - strandat 799.903 kb on + strandat 799.904 kb on - strandat 800.238 kb on + strand, within GFF2113at 800.238 kb on + strand, within GFF2113at 800.238 kb on + strand, within GFF2113at 800.239 kb on - strand, within GFF2113at 800.239 kb on - strand, within GFF2113at 800.239 kb on - strand, within GFF2113at 800.239 kb on - strand, within GFF2113at 800.250 kb on + strand, within GFF2113at 800.250 kb on + strand, within GFF2113at 800.251 kb on - strand, within GFF2113at 800.415 kb on + strand, within GFF2113at 800.415 kb on + strand, within GFF2113at 800.416 kb on - strand, within GFF2113at 800.417 kb on + strand, within GFF2113at 800.417 kb on + strand, within GFF2113at 800.417 kb on + strand, within GFF2113at 800.418 kb on - strand, within GFF2113at 800.418 kb on - strand, within GFF2113at 800.418 kb on - strand, within GFF2113at 800.492 kb on + strandat 800.492 kb on + strandat 800.493 kb on - strandat 800.493 kb on - strandat 800.585 kb on + strandat 800.585 kb on + strandat 800.586 kb on - strandat 800.586 kb on - strandat 800.611 kb on + strandat 800.611 kb on + strandat 800.702 kb on + strand, within GFF2114at 800.702 kb on + strand, within GFF2114at 800.703 kb on - strand, within GFF2114at 800.703 kb on - strand, within GFF2114at 800.783 kb on - strand, within GFF2114at 800.802 kb on - strand, within GFF2114at 800.821 kb on + strand, within GFF2114at 800.846 kb on + strand, within GFF2114at 800.846 kb on + strand, within GFF2114at 800.846 kb on + strand, within GFF2114at 800.846 kb on + strand, within GFF2114at 800.846 kb on + strand, within GFF2114at 800.847 kb on - strand, within GFF2114at 800.957 kb on + strand, within GFF2114at 800.958 kb on - strand, within GFF2114at 800.958 kb on - strand, within GFF2114at 800.958 kb on - strand, within GFF2114at 800.958 kb on - strand, within GFF2114at 800.958 kb on - strand, within GFF2114at 800.961 kb on - strand, within GFF2114at 800.975 kb on + strand, within GFF2114at 800.975 kb on + strand, within GFF2114at 800.975 kb on + strand, within GFF2114at 800.976 kb on - strand, within GFF2114at 800.976 kb on - strand, within GFF2114at 800.976 kb on - strand, within GFF2114at 801.038 kb on + strand, within GFF2114at 801.039 kb on - strand, within GFF2114at 801.041 kb on + strand, within GFF2114at 801.041 kb on + strand, within GFF2114at 801.041 kb on + strand, within GFF2114at 801.042 kb on - strand, within GFF2114at 801.356 kb on + strand, within GFF2114at 801.414 kb on - strand, within GFF2114at 801.435 kb on - strand, within GFF2114at 801.502 kb on + strandat 801.502 kb on + strandat 801.594 kb on + strandat 801.594 kb on + strandat 801.594 kb on + strandat 801.594 kb on + strandat 801.594 kb on + strandat 801.595 kb on - strandat 801.595 kb on - strandat 801.638 kb on - strandat 801.638 kb on - strandat 801.638 kb on - strandat 801.718 kb on + strandat 801.718 kb on + strandat 801.718 kb on + strandat 801.718 kb on + strandat 801.718 kb on + strandat 801.719 kb on - strandat 801.719 kb on - strandat 801.719 kb on - strandat 801.719 kb on - strandat 801.719 kb on - strandat 802.078 kb on - strand, within GFF2115at 802.144 kb on + strand, within GFF2115at 802.178 kb on + strand, within GFF2115at 802.178 kb on + strand, within GFF2115at 802.178 kb on + strand, within GFF2115at 802.178 kb on + strand, within GFF2115at 802.178 kb on + strand, within GFF2115at 802.178 kb on + strand, within GFF2115at 802.178 kb on + strand, within GFF2115at 802.179 kb on - strand, within GFF2115at 802.179 kb on - strand, within GFF2115at 802.180 kb on + strand, within GFF2115at 802.180 kb on + strand, within GFF2115at 802.180 kb on + strand, within GFF2115at 802.181 kb on - strand, within GFF2115at 802.181 kb on - strand, within GFF2115at 802.181 kb on - strand, within GFF2115at 802.227 kb on - strand, within GFF2115at 802.442 kb on - strand, within GFF2115at 802.514 kb on - strandat 802.514 kb on - strandat 802.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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799,616 - GFF2112 0.48 +0.2
799,686 + GFF2112 0.82 +0.1
799,686 + GFF2112 0.82 -1.1
799,720 + -0.6
799,720 + +0.3
799,720 + -0.5
799,720 + +0.9
799,721 - -0.9
799,721 - +0.1
799,721 - +0.2
799,721 - +0.0
799,726 + +1.4
799,727 - +0.5
799,762 - -0.2
799,762 - -1.0
799,903 + -0.4
799,904 - -0.3
800,238 + GFF2113 0.39 -1.0
800,238 + GFF2113 0.39 +0.1
800,238 + GFF2113 0.39 +0.7
800,239 - GFF2113 0.39 -0.4
800,239 - GFF2113 0.39 -0.8
800,239 - GFF2113 0.39 +0.8
800,239 - GFF2113 0.39 -0.2
800,250 + GFF2113 0.41 -0.5
800,250 + GFF2113 0.41 +0.0
800,251 - GFF2113 0.42 +0.0
800,415 + GFF2113 0.75 -1.3
800,415 + GFF2113 0.75 -1.4
800,416 - GFF2113 0.75 -1.3
800,417 + GFF2113 0.75 -1.4
800,417 + GFF2113 0.75 +0.6
800,417 + GFF2113 0.75 -1.2
800,418 - GFF2113 0.75 +0.5
800,418 - GFF2113 0.75 -0.6
800,418 - GFF2113 0.75 +1.1
800,492 + -0.2
800,492 + -0.1
800,493 - -1.4
800,493 - -2.2
800,585 + -0.5
800,585 + -0.2
800,586 - -0.4
800,586 - +0.3
800,611 + +0.2
800,611 + -0.1
800,702 + GFF2114 0.14 +0.3
800,702 + GFF2114 0.14 +0.8
800,703 - GFF2114 0.14 +0.1
800,703 - GFF2114 0.14 +0.2
800,783 - GFF2114 0.23 -1.2
800,802 - GFF2114 0.25 -0.6
800,821 + GFF2114 0.27 -0.4
800,846 + GFF2114 0.29 +1.7
800,846 + GFF2114 0.29 -2.1
800,846 + GFF2114 0.29 +0.2
800,846 + GFF2114 0.29 +0.5
800,846 + GFF2114 0.29 +0.6
800,847 - GFF2114 0.29 +0.3
800,957 + GFF2114 0.41 -1.1
800,958 - GFF2114 0.41 -0.6
800,958 - GFF2114 0.41 -0.2
800,958 - GFF2114 0.41 -0.2
800,958 - GFF2114 0.41 +0.2
800,958 - GFF2114 0.41 +0.5
800,961 - GFF2114 0.41 -0.3
800,975 + GFF2114 0.42 +1.1
800,975 + GFF2114 0.42 -1.5
800,975 + GFF2114 0.42 +0.8
800,976 - GFF2114 0.42 +1.9
800,976 - GFF2114 0.42 -1.2
800,976 - GFF2114 0.42 -0.6
801,038 + GFF2114 0.49 -0.2
801,039 - GFF2114 0.49 -0.4
801,041 + GFF2114 0.49 -0.7
801,041 + GFF2114 0.49 +0.2
801,041 + GFF2114 0.49 -0.8
801,042 - GFF2114 0.49 -0.1
801,356 + GFF2114 0.82 +1.4
801,414 - GFF2114 0.88 -0.6
801,435 - GFF2114 0.90 -0.7
801,502 + +0.8
801,502 + +0.7
801,594 + +0.3
801,594 + +0.7
801,594 + -0.8
801,594 + -0.7
801,594 + +0.1
801,595 - +1.2
801,595 - +0.4
801,638 - +1.1
801,638 - +0.0
801,638 - +0.4
801,718 + +0.7
801,718 + -2.4
801,718 + -1.8
801,718 + -1.8
801,718 + +0.0
801,719 - -0.4
801,719 - -1.4
801,719 - -2.1
801,719 - -1.4
801,719 - -0.9
802,078 - GFF2115 0.45 -0.2
802,144 + GFF2115 0.52 +0.7
802,178 + GFF2115 0.56 +0.6
802,178 + GFF2115 0.56 +0.3
802,178 + GFF2115 0.56 +0.0
802,178 + GFF2115 0.56 +1.1
802,178 + GFF2115 0.56 +1.8
802,178 + GFF2115 0.56 -0.2
802,178 + GFF2115 0.56 -0.7
802,179 - GFF2115 0.56 +0.4
802,179 - GFF2115 0.56 +0.2
802,180 + GFF2115 0.56 +0.2
802,180 + GFF2115 0.56 +0.1
802,180 + GFF2115 0.56 +0.3
802,181 - GFF2115 0.56 -0.9
802,181 - GFF2115 0.56 -2.1
802,181 - GFF2115 0.56 -0.4
802,227 - GFF2115 0.61 -0.2
802,442 - GFF2115 0.83 -0.4
802,514 - +0.2
802,514 - +0.4
802,534 + -1.4

Or see this region's nucleotide sequence