Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF19 and GFF20 are separated by 249 nucleotides GFF20 and GFF21 are separated by 82 nucleotides GFF21 and GFF22 are separated by 289 nucleotides
GFF19 - N-substituted formamide deformylase, at 23,358 to 25,175
GFF19
GFF20 - hypothetical protein, at 25,425 to 25,838
GFF20
GFF21 - Regulator of nucleoside diphosphate kinase, at 25,921 to 26,337
GFF21
GFF22 - HTH-type transcriptional regulator HdfR, at 26,627 to 27,529
GFF22
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 24.987 kb on + strand, within GFF19 at 24.987 kb on + strand, within GFF19 at 25.147 kb on + strand at 25.147 kb on + strand at 25.229 kb on - strand at 25.234 kb on - strand at 25.325 kb on - strand at 25.354 kb on + strand at 25.399 kb on + strand at 26.186 kb on - strand, within GFF21 at 26.215 kb on + strand, within GFF21 at 26.215 kb on + strand, within GFF21 at 26.216 kb on - strand, within GFF21 at 26.216 kb on - strand, within GFF21 at 26.425 kb on + strand at 26.579 kb on + strand at 26.584 kb on + strand at 26.584 kb on + strand at 26.584 kb on + strand at 26.724 kb on + strand, within GFF22 at 26.935 kb on - strand, within GFF22 at 26.935 kb on - strand, within GFF22 at 27.184 kb on - strand, within GFF22 at 27.255 kb on - strand, within GFF22 at 27.255 kb on - strand, within GFF22 at 27.255 kb on - strand, within GFF22 at 27.330 kb on + strand, within GFF22 at 27.330 kb on + strand, within GFF22 at 27.331 kb on - strand, within GFF22
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 24,987 + GFF19 0.90 -0.3 24,987 + GFF19 0.90 +0.6 25,147 + -1.3 25,147 + -0.5 25,229 - +1.0 25,234 - -0.3 25,325 - -1.3 25,354 + -0.6 25,399 + -0.1 26,186 - GFF21 0.64 -0.4 26,215 + GFF21 0.71 +1.3 26,215 + GFF21 0.71 +0.1 26,216 - GFF21 0.71 +2.2 26,216 - GFF21 0.71 -0.4 26,425 + -0.6 26,579 + -0.1 26,584 + -0.5 26,584 + -1.5 26,584 + +0.7 26,724 + GFF22 0.11 -0.1 26,935 - GFF22 0.34 -0.1 26,935 - GFF22 0.34 -0.5 27,184 - GFF22 0.62 -1.2 27,255 - GFF22 0.70 -2.5 27,255 - GFF22 0.70 -0.8 27,255 - GFF22 0.70 +0.7 27,330 + GFF22 0.78 -0.6 27,330 + GFF22 0.78 -1.0 27,331 - GFF22 0.78 -0.3
Or see this region's nucleotide sequence